Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_J07
         (409 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              24   0.76 
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    23   1.8  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   7.1  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   7.1  
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    20   9.4  
AY526235-1|AAS20468.1|  169|Apis mellifera esterase protein.           20   9.4  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    20   9.4  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           20   9.4  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.8 bits (49), Expect = 0.76
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +3

Query: 276 TDPVGEIEPPFPYRD 320
           T+PVG + P FP  D
Sbjct: 203 TEPVGSVRPKFPSMD 217


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.6 bits (46), Expect = 1.8
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = -3

Query: 356 TFIDIRISFDGDISVRERWFD 294
           T  DI++ +   ++ RE+W D
Sbjct: 72  TISDIKMEYSVQLTFREQWLD 92


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 20.6 bits (41), Expect = 7.1
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -1

Query: 148 LALAQNNRFVTHWLETHNCENKSKQVT 68
           L L++  R+V+ W E +  +N  K+ T
Sbjct: 220 LRLSRLVRYVSQWEEVYILQNLQKKRT 246


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 20.6 bits (41), Expect = 7.1
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = -1

Query: 334 LLMVTSRYGNG 302
           LL++TS +GNG
Sbjct: 517 LLVITSTFGNG 527


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 20.2 bits (40), Expect = 9.4
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = -1

Query: 112 WLETHNCENKSKQVTLWVYSKFKNL 38
           W +T N   K+KQV  ++    +N+
Sbjct: 242 WTQTENSLEKAKQVGAFMGCPTRNV 266


>AY526235-1|AAS20468.1|  169|Apis mellifera esterase protein.
          Length = 169

 Score = 20.2 bits (40), Expect = 9.4
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = -1

Query: 112 WLETHNCENKSKQVTLWVYSKFKNL 38
           W +T N   K+KQV  ++    +N+
Sbjct: 113 WTQTENSLEKAKQVGAFMGCPTRNV 137


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 20.2 bits (40), Expect = 9.4
 Identities = 6/9 (66%), Positives = 7/9 (77%)
 Frame = -1

Query: 181 HTQKSLHIH 155
           HTQ  LH+H
Sbjct: 666 HTQSQLHLH 674


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 20.2 bits (40), Expect = 9.4
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = -1

Query: 112 WLETHNCENKSKQVTLWVYSKFKNL 38
           W +T N   K+KQV  ++    +N+
Sbjct: 242 WTQTENSLEKAKQVGAFMGCPTRNV 266


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,846
Number of Sequences: 438
Number of extensions: 2641
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10256061
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)