Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_J06
         (279 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27E2.01 |||alpha-amylase homolog |Schizosaccharomyces pombe|...    27   0.37 
SPBC16G5.15c |fkh2||fork head transcription factor Fkh2 |Schizos...    25   1.5  
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S...    25   2.0  
SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase Ubp22|Sch...    25   2.6  
SPBC12C2.13c |fnx1|SPBC21D10.04c|MFS multidrug efflux transporte...    25   2.6  
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    24   4.6  
SPAC3F10.10c |map3||pheromone M-factor receptor |Schizosaccharom...    23   6.1  

>SPAC27E2.01 |||alpha-amylase homolog |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 491

 Score = 27.5 bits (58), Expect = 0.37
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = -2

Query: 191 FSFLVLFVKNNEFIICFIIVKMTNSDNMIMVNKSKYIF 78
           F FL   +K  +F++  +    T   NM+ VN+  Y+F
Sbjct: 375 FQFLKKLIKLRQFLVDNVSGFTTELSNMLFVNEHVYVF 412


>SPBC16G5.15c |fkh2||fork head transcription factor Fkh2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 25.4 bits (53), Expect = 1.5
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +1

Query: 4   RGEHVARTRGAPHLRSPALLVPWYQK 81
           R E +A+TR  P  RSP+  VP   K
Sbjct: 304 REEFIAKTRKTPRKRSPSSPVPLLAK 329


>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
           Tor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2337

 Score = 25.0 bits (52), Expect = 2.0
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +1

Query: 10  EHVARTRGAPHLRSPALLVPWYQKMYLDLLTIIILSLFV 126
           E   R  G  ++ +PA ++P+ +K+ L  LTI+  S  +
Sbjct: 581 ESALRIIGRLNVYNPAYVMPYLRKIMLKTLTILDYSTII 619


>SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase
            Ubp22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1108

 Score = 24.6 bits (51), Expect = 2.6
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +3

Query: 27   TWRPASTLSRVVGALVPEDVFRLVNHYHIITICHFY 134
            T  PA+TL   VG +VP D  +L     I+ + HF+
Sbjct: 979  TINPAATL---VGEVVPLDQLQLYPEEKIVQVHHFH 1011


>SPBC12C2.13c |fnx1|SPBC21D10.04c|MFS multidrug efflux
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 531

 Score = 24.6 bits (51), Expect = 2.6
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +3

Query: 12  TCCSYTWRPASTLSRVVGALVPED 83
           T CSY     STL  ++ +L PE+
Sbjct: 397 TGCSYGMNLTSTLIAIISSLAPEE 420


>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
            Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 23.8 bits (49), Expect = 4.6
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +3

Query: 105  YHIITICHFYYYKTNYKL 158
            YH++T+C   YY  N KL
Sbjct: 1382 YHVVTVC---YYNGNQKL 1396


>SPAC3F10.10c |map3||pheromone M-factor receptor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 365

 Score = 23.4 bits (48), Expect = 6.1
 Identities = 10/26 (38%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
 Frame = +3

Query: 99  NHYHIITI--CHFYYYKTNYKLIIFY 170
           N Y +I +  C+  +Y+T Y L+ FY
Sbjct: 136 NRYVVICMNGCYSSFYQTWYTLLFFY 161


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,093,618
Number of Sequences: 5004
Number of extensions: 19292
Number of successful extensions: 45
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 61566900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)