Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_J06
(279 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_04_0181 - 18192774-18192970,18193519-18193882 28 0.93
05_05_0079 + 22239238-22239395,22240837-22240877,22240955-222410... 28 1.2
01_06_1339 - 36413477-36413550,36413924-36413995,36414111-364141... 28 1.2
05_01_0214 - 1615519-1616775 27 1.6
04_04_0884 + 29084341-29084590,29084670-29084800,29084890-290851... 27 2.1
05_03_0568 + 15560511-15561093,15562522-15562535 27 2.8
09_03_0171 - 13062794-13064017 26 4.9
01_06_0590 + 30453407-30455442,30456313-30456586,30456992-30457318 26 4.9
01_01_0836 + 6527902-6528218,6529280-6529632,6529722-6529889,653... 26 4.9
10_05_0034 + 8431753-8431790,8431940-8432063,8432726-8433038,843... 25 6.5
02_05_0681 + 30842038-30842301,30843067-30843300,30843409-308435... 25 6.5
02_03_0052 - 14456925-14457176,14457277-14457437,14457843-144579... 25 6.5
07_01_0508 + 3786655-3787158,3787542-3787904,3788003-3788088,378... 25 8.6
06_01_0076 - 622789-623689,623714-623931 25 8.6
05_06_0085 + 25441460-25443504,25444263-25444536,25445091-25445468 25 8.6
01_06_0709 - 31367152-31367532,31367762-31368035,31368474-31370557 25 8.6
>03_04_0181 - 18192774-18192970,18193519-18193882
Length = 186
Score = 28.3 bits (60), Expect = 0.93
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +3
Query: 6 RGTCCSYTWRPASTLSRVVGALVPEDVFRLVNHYHI 113
RGTC + W P + ++ L +VFR +NH +
Sbjct: 132 RGTCVADMWLPCPSNLKLEEPLPAWNVFRALNHLQV 167
>05_05_0079 +
22239238-22239395,22240837-22240877,22240955-22241033,
22241570-22241656,22241749-22241837,22241933-22242004,
22242094-22242186,22242339-22242427
Length = 235
Score = 27.9 bits (59), Expect = 1.2
Identities = 8/16 (50%), Positives = 13/16 (81%)
Frame = +3
Query: 123 CHFYYYKTNYKLIIFY 170
C+ YYY+TNY ++I +
Sbjct: 49 CNLYYYRTNYFILIMF 64
>01_06_1339 -
36413477-36413550,36413924-36413995,36414111-36414199,
36414293-36414379,36414865-36414943,36415043-36415083,
36415787-36415944
Length = 199
Score = 27.9 bits (59), Expect = 1.2
Identities = 8/16 (50%), Positives = 13/16 (81%)
Frame = +3
Query: 123 CHFYYYKTNYKLIIFY 170
C+ YYY+TNY ++I +
Sbjct: 49 CNLYYYRTNYFILIMF 64
>05_01_0214 - 1615519-1616775
Length = 418
Score = 27.5 bits (58), Expect = 1.6
Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
Frame = +1
Query: 70 WYQKMY--LDLLTIIILSLFVIFTIIKQIIN 156
WY+ + +DL+ +I S+ V+FT IK + N
Sbjct: 303 WYKPEWKIIDLICTLIFSVIVLFTTIKMLRN 333
>04_04_0884 +
29084341-29084590,29084670-29084800,29084890-29085132,
29085223-29085481,29085597-29085832
Length = 372
Score = 27.1 bits (57), Expect = 2.1
Identities = 8/23 (34%), Positives = 16/23 (69%)
Frame = -2
Query: 143 FIIVKMTNSDNMIMVNKSKYIFW 75
F+ + + NS + + ++SKY+FW
Sbjct: 311 FLCISIANSTSTLCNDRSKYVFW 333
>05_03_0568 + 15560511-15561093,15562522-15562535
Length = 198
Score = 26.6 bits (56), Expect = 2.8
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = -2
Query: 140 IIVKMTNSDNMIMVNKSKYIFWYQGTNNAGERRCGAPRVRATCSPR 3
II K+ S M +S ++ + +CGAPR R SPR
Sbjct: 100 IIPKLRRSHTMPSPMRSSASATAAAASDGEQVQCGAPRKRLVASPR 145
>09_03_0171 - 13062794-13064017
Length = 407
Score = 25.8 bits (54), Expect = 4.9
Identities = 11/35 (31%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = -2
Query: 173 FVKNNEFIICFIIVKMTNSDNMIM-VNKSKYIFWY 72
F+ NN + CF+ K ++ + +++ VN +FWY
Sbjct: 176 FLANNNVVKCFLSHKPSDPNCIVLVVNCRDTMFWY 210
>01_06_0590 + 30453407-30455442,30456313-30456586,30456992-30457318
Length = 878
Score = 25.8 bits (54), Expect = 4.9
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +3
Query: 54 RVVGALVPEDVFRLVNHYHIITICHFYYYKTNYKLIIFY 170
RV+ L PED + ++ YH++ + F + N I F+
Sbjct: 208 RVIEVLNPEDDYIWIHDYHLLALPSFLRRRFNRLRIGFF 246
>01_01_0836 +
6527902-6528218,6529280-6529632,6529722-6529889,
6530004-6530051,6530142-6530372,6530435-6530548,
6530638-6530723
Length = 438
Score = 25.8 bits (54), Expect = 4.9
Identities = 12/45 (26%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Frame = -2
Query: 134 VKMTNSDNMIMVNKSKYIFWYQGT--NNAGERRCGAPRVRATCSP 6
+ ++ D++ VN S + G + + RRC P+ +A C P
Sbjct: 351 ISCSSLDHLAFVNSSSLFIYILGVLHSKSWVRRCDDPQPKAHCRP 395
>10_05_0034 +
8431753-8431790,8431940-8432063,8432726-8433038,
8433189-8433251,8433778-8434058
Length = 272
Score = 25.4 bits (53), Expect = 6.5
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +3
Query: 87 FRLVNHYHIITICHFYYYKTNYKLII 164
F L N + T+C F++YKT + +I
Sbjct: 243 FALSNGIKLNTVCIFHFYKTTHLGVI 268
>02_05_0681 +
30842038-30842301,30843067-30843300,30843409-30843578,
30844130-30844474,30844475-30844661,30844747-30844798,
30844843-30845108,30845302-30845400,30845577-30846292,
30846616-30847098,30847288-30847546
Length = 1024
Score = 25.4 bits (53), Expect = 6.5
Identities = 11/37 (29%), Positives = 19/37 (51%)
Frame = -2
Query: 161 NEFIICFIIVKMTNSDNMIMVNKSKYIFWYQGTNNAG 51
++F+ CF++ TNS N+ + + W TN G
Sbjct: 319 HKFVGCFLLGSCTNSGNLSRYRQKPPLPWSAITNPLG 355
>02_03_0052 -
14456925-14457176,14457277-14457437,14457843-14457914,
14458105-14458221,14458310-14458322,14458917-14458946,
14459837-14460010,14460276-14460417,14460731-14460792,
14461047-14461643
Length = 539
Score = 25.4 bits (53), Expect = 6.5
Identities = 8/20 (40%), Positives = 14/20 (70%)
Frame = +3
Query: 87 FRLVNHYHIITICHFYYYKT 146
F NH ++ ++C F++YKT
Sbjct: 510 FATHNHIYLQSLCTFHFYKT 529
>07_01_0508 +
3786655-3787158,3787542-3787904,3788003-3788088,
3788164-3788217,3788838-3789020,3789716-3789737
Length = 403
Score = 25.0 bits (52), Expect = 8.6
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -2
Query: 155 FIICFIIVKMTNSDNMIMVNKSKYIFWY 72
F+ CF + M + +I K+ +IFWY
Sbjct: 245 FLSCFSYLVMYHISFLIPNKKAAHIFWY 272
>06_01_0076 - 622789-623689,623714-623931
Length = 372
Score = 25.0 bits (52), Expect = 8.6
Identities = 8/30 (26%), Positives = 17/30 (56%)
Frame = -2
Query: 113 NMIMVNKSKYIFWYQGTNNAGERRCGAPRV 24
++++ ++S +W GTN+ E G R+
Sbjct: 155 HLLLCSRSSIFYWQVGTNSWSEHPFGGERI 184
>05_06_0085 + 25441460-25443504,25444263-25444536,25445091-25445468
Length = 898
Score = 25.0 bits (52), Expect = 8.6
Identities = 15/55 (27%), Positives = 25/55 (45%)
Frame = +3
Query: 6 RGTCCSYTWRPASTLSRVVGALVPEDVFRLVNHYHIITICHFYYYKTNYKLIIFY 170
RG +Y +VV + PED + V+ YH++ + F + N I F+
Sbjct: 195 RGAWEAYVLANKYFFEKVVEVINPEDDYVWVHDYHLMALPTFLRRRFNRLRIGFF 249
>01_06_0709 - 31367152-31367532,31367762-31368035,31368474-31370557
Length = 912
Score = 25.0 bits (52), Expect = 8.6
Identities = 15/55 (27%), Positives = 25/55 (45%)
Frame = +3
Query: 6 RGTCCSYTWRPASTLSRVVGALVPEDVFRLVNHYHIITICHFYYYKTNYKLIIFY 170
RG +Y +VV + PED + V+ YH++ + F + N I F+
Sbjct: 211 RGAWEAYVLANKFFFEKVVEVINPEDDYVWVHDYHLMALPTFLRRRFNRLRIGFF 265
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,323,913
Number of Sequences: 37544
Number of extensions: 98908
Number of successful extensions: 283
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 280
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 283
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 267635896
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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