Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_J06
(279 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL132876-3|CAD21657.2| 746|Caenorhabditis elegans Hypothetical ... 30 0.28
Z72514-3|CAA96673.1| 741|Caenorhabditis elegans Hypothetical pr... 29 0.49
Z98851-1|CAB11539.2| 327|Caenorhabditis elegans Hypothetical pr... 26 3.5
U61946-4|AAC24394.1| 337|Caenorhabditis elegans Serpentine rece... 26 3.5
U41534-1|AAB47593.3| 1437|Caenorhabditis elegans Temporarily ass... 26 3.5
AL021504-1|CAA16428.3| 325|Caenorhabditis elegans Hypothetical ... 26 3.5
AC006673-11|AAF39920.1| 311|Caenorhabditis elegans Hypothetical... 26 3.5
AL132902-13|CAL64008.1| 913|Caenorhabditis elegans Hypothetical... 25 6.1
Z93388-12|CAB07661.2| 294|Caenorhabditis elegans Hypothetical p... 25 8.0
Z81510-1|CAB04160.1| 367|Caenorhabditis elegans Hypothetical pr... 25 8.0
Z81093-1|CAB03148.2| 507|Caenorhabditis elegans Hypothetical pr... 25 8.0
Z71178-6|CAA94880.2| 1185|Caenorhabditis elegans Hypothetical pr... 25 8.0
Z69790-3|CAD56579.1| 1234|Caenorhabditis elegans Hypothetical pr... 25 8.0
Z69790-2|CAA93653.2| 1271|Caenorhabditis elegans Hypothetical pr... 25 8.0
Z68118-1|CAA92186.2| 1014|Caenorhabditis elegans Hypothetical pr... 25 8.0
X98601-1|CAA67198.1| 507|Caenorhabditis elegans non-alpha nicot... 25 8.0
X98246-1|CAA66902.1| 507|Caenorhabditis elegans nicotinic acety... 25 8.0
AL023856-4|CAC15863.1| 331|Caenorhabditis elegans Hypothetical ... 25 8.0
AF339882-1|AAK14396.1| 1329|Caenorhabditis elegans attractin pro... 25 8.0
AF235027-1|AAF68380.1| 1017|Caenorhabditis elegans guanylyl cycl... 25 8.0
AF016414-3|AAW88405.1| 329|Caenorhabditis elegans Serpentine re... 25 8.0
>AL132876-3|CAD21657.2| 746|Caenorhabditis elegans Hypothetical
protein Y105E8A.3 protein.
Length = 746
Score = 29.9 bits (64), Expect = 0.28
Identities = 14/48 (29%), Positives = 29/48 (60%)
Frame = +1
Query: 16 VARTRGAPHLRSPALLVPWYQKMYLDLLTIIILSLFVIFTIIKQIINS 159
+A T G+ + LL+ W+ +++D L +ILSL +I ++ +++S
Sbjct: 568 LADTLGSVFVIISTLLIQWFGWVWVDPLCSLILSLLIIGSVYPLLVSS 615
>Z72514-3|CAA96673.1| 741|Caenorhabditis elegans Hypothetical
protein T10B10.3 protein.
Length = 741
Score = 29.1 bits (62), Expect = 0.49
Identities = 16/42 (38%), Positives = 27/42 (64%), Gaps = 6/42 (14%)
Frame = -2
Query: 176 LFVKNNEFII-CFIIVKMTNSDNM-----IMVNKSKYIFWYQ 69
+F K++E II CF +++ +SDNM +M N + Y+F Y+
Sbjct: 325 VFEKSSEKIIECFKVIESFHSDNMKLRYLVMTNYNVYVFKYR 366
>Z98851-1|CAB11539.2| 327|Caenorhabditis elegans Hypothetical
protein H12I19.1 protein.
Length = 327
Score = 26.2 bits (55), Expect = 3.5
Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Frame = -2
Query: 260 IIKSYIFSHAYKIFIKQIVY*LRFSFLVLFVKNNEFIICFIIV--KMTNSDNMIMVNKSK 87
II + S Y+ +++ + F+ L+ + F I +I K+TN + N K
Sbjct: 171 IISWLVSSGNYQFWLEFSYMTVYFATLIFIFTSAFFYIPIMISVRKLTNLTSAKQSNPEK 230
Query: 86 YIFW 75
YIFW
Sbjct: 231 YIFW 234
>U61946-4|AAC24394.1| 337|Caenorhabditis elegans Serpentine
receptor, class h protein223 protein.
Length = 337
Score = 26.2 bits (55), Expect = 3.5
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 8/57 (14%)
Frame = -2
Query: 278 FFFFFLIIKSYIFSHAYKIFIKQIVY*L-----RFSFLVLFVKN---NEFIICFIIV 132
FF F+ I Y FS++Y + I+Y L FS +V+ + EF++ I++
Sbjct: 256 FFIIFIPISYYTFSNSYYAAVNNIMYVLMATHGSFSTVVMIIVQKPYREFLLTVILL 312
>U41534-1|AAB47593.3| 1437|Caenorhabditis elegans Temporarily
assigned gene nameprotein 213 protein.
Length = 1437
Score = 26.2 bits (55), Expect = 3.5
Identities = 13/45 (28%), Positives = 20/45 (44%)
Frame = +3
Query: 27 TWRPASTLSRVVGALVPEDVFRLVNHYHIITICHFYYYKTNYKLI 161
+W LS V+ L P FR + I+ + YY K + L+
Sbjct: 411 SWEDLGKLSSVLAYLGPRIAFRASTNIKIVRLLTAYYRKVDKDLL 455
>AL021504-1|CAA16428.3| 325|Caenorhabditis elegans Hypothetical
protein Y61B8B.1 protein.
Length = 325
Score = 26.2 bits (55), Expect = 3.5
Identities = 10/50 (20%), Positives = 26/50 (52%)
Frame = +3
Query: 87 FRLVNHYHIITICHFYYYKTNYKLIIFYK*NQKTKT*LINYLFDKYFVCV 236
F + HY ++ F YY++ + F++ +QK + + ++ +Y + +
Sbjct: 87 FNMPTHYCMLVSLTFIYYESECLALCFFQKHQKIASVIDVHVIPRYAIII 136
>AC006673-11|AAF39920.1| 311|Caenorhabditis elegans Hypothetical
protein K09D9.3 protein.
Length = 311
Score = 26.2 bits (55), Expect = 3.5
Identities = 15/34 (44%), Positives = 24/34 (70%)
Frame = +1
Query: 49 SPALLVPWYQKMYLDLLTIIILSLFVIFTIIKQI 150
S LL+P + ++ DLL I+I+SL V+ I+K+I
Sbjct: 192 SAHLLLPDGRVIHFDLLRILIISL-VMLNILKKI 224
>AL132902-13|CAL64008.1| 913|Caenorhabditis elegans Hypothetical
protein Y71A12B.17 protein.
Length = 913
Score = 25.4 bits (53), Expect = 6.1
Identities = 18/57 (31%), Positives = 23/57 (40%), Gaps = 2/57 (3%)
Frame = +1
Query: 70 WYQKMYLDLLTIIILSL--FVIFTIIKQIINSXXXXXXXXXXXXXXXTICLINILYA 234
W +KMYL LLT+ S+ F +I Q I+S C N L A
Sbjct: 81 WTKKMYLPLLTLNRASIVTFGFLLLIYQAIDSNVFLLYLYSISWGLIAACYFNSLCA 137
>Z93388-12|CAB07661.2| 294|Caenorhabditis elegans Hypothetical
protein T10C6.4 protein.
Length = 294
Score = 25.0 bits (52), Expect = 8.0
Identities = 20/73 (27%), Positives = 34/73 (46%)
Frame = -2
Query: 275 FFFFLIIKSYIFSHAYKIFIKQIVY*LRFSFLVLFVKNNEFIICFIIVKMTNSDNMIMVN 96
+FFF S+ F +F++ + L+L + +F+I FII + S +I++
Sbjct: 130 YFFFFYNCSFPFFQFGWVFMEAQRNETCGAKLLLLSLSVQFVIIFIITILDISTFIILIT 189
Query: 95 KSKYIFWYQGTNN 57
K IF Q N
Sbjct: 190 CRKSIFKGQSKEN 202
>Z81510-1|CAB04160.1| 367|Caenorhabditis elegans Hypothetical
protein F21D9.1 protein.
Length = 367
Score = 25.0 bits (52), Expect = 8.0
Identities = 13/55 (23%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Frame = -2
Query: 197 LRFSFLVLFVKNNEFIICF-IIVKMTNSDNMIMVNKSKYIF--WYQGTNNAGERR 42
L + +++F K N+F+ + + K +SD + S + + W+ + GER+
Sbjct: 83 LLYQRIIIFEKKNDFVSVYRAMCKKKSSDPSTLAKYSVHFWVEWFYKIDKFGERK 137
>Z81093-1|CAB03148.2| 507|Caenorhabditis elegans Hypothetical
protein F09E8.7 protein.
Length = 507
Score = 25.0 bits (52), Expect = 8.0
Identities = 10/26 (38%), Positives = 18/26 (69%), Gaps = 2/26 (7%)
Frame = +1
Query: 40 HLRSPAL--LVPWYQKMYLDLLTIII 111
+ RSP L PW +K++LD+L +++
Sbjct: 326 YFRSPITHRLPPWVRKVFLDILPLLM 351
>Z71178-6|CAA94880.2| 1185|Caenorhabditis elegans Hypothetical
protein B0024.8 protein.
Length = 1185
Score = 25.0 bits (52), Expect = 8.0
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +3
Query: 48 LSRVVGALVPEDVFRLVNHYH 110
+ +VV + PE++ RLV H H
Sbjct: 291 MKQVVDQITPEEIARLVPHLH 311
>Z69790-3|CAD56579.1| 1234|Caenorhabditis elegans Hypothetical
protein F33C8.1b protein.
Length = 1234
Score = 25.0 bits (52), Expect = 8.0
Identities = 9/14 (64%), Positives = 10/14 (71%), Gaps = 1/14 (7%)
Frame = +2
Query: 50 LPRC-WCPGTRRCI 88
L +C WCP T RCI
Sbjct: 803 LEQCMWCPSTNRCI 816
>Z69790-2|CAA93653.2| 1271|Caenorhabditis elegans Hypothetical
protein F33C8.1a protein.
Length = 1271
Score = 25.0 bits (52), Expect = 8.0
Identities = 9/14 (64%), Positives = 10/14 (71%), Gaps = 1/14 (7%)
Frame = +2
Query: 50 LPRC-WCPGTRRCI 88
L +C WCP T RCI
Sbjct: 840 LEQCMWCPSTNRCI 853
>Z68118-1|CAA92186.2| 1014|Caenorhabditis elegans Hypothetical
protein R01E6.1 protein.
Length = 1014
Score = 25.0 bits (52), Expect = 8.0
Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Frame = +1
Query: 73 YQKMYLDLLTIII-LSLFVIFTIIKQ 147
Y + +L+LLT+II L LF +F I Q
Sbjct: 21 YSEKHLELLTVIILLKLFGVFHRINQ 46
>X98601-1|CAA67198.1| 507|Caenorhabditis elegans non-alpha
nicotinic acetylcholinereceptor subunit protein.
Length = 507
Score = 25.0 bits (52), Expect = 8.0
Identities = 10/26 (38%), Positives = 18/26 (69%), Gaps = 2/26 (7%)
Frame = +1
Query: 40 HLRSPAL--LVPWYQKMYLDLLTIII 111
+ RSP L PW +K++LD+L +++
Sbjct: 326 YFRSPITHRLPPWVRKVFLDILPLLM 351
>X98246-1|CAA66902.1| 507|Caenorhabditis elegans nicotinic
acetylcholine receptor protein.
Length = 507
Score = 25.0 bits (52), Expect = 8.0
Identities = 10/26 (38%), Positives = 18/26 (69%), Gaps = 2/26 (7%)
Frame = +1
Query: 40 HLRSPAL--LVPWYQKMYLDLLTIII 111
+ RSP L PW +K++LD+L +++
Sbjct: 326 YFRSPITHRLPPWVRKVFLDILPLLM 351
>AL023856-4|CAC15863.1| 331|Caenorhabditis elegans Hypothetical
protein Y94A7B.7 protein.
Length = 331
Score = 25.0 bits (52), Expect = 8.0
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Frame = +1
Query: 52 PALLVPWYQKMYLDLLTIIILSLFVI--FTIIKQIIN 156
P +V W +++ D+L I +L++F I TII N
Sbjct: 80 PLGIVQWEKRIPTDILVIYVLAIFKIVPMTIISMFEN 116
>AF339882-1|AAK14396.1| 1329|Caenorhabditis elegans attractin
protein.
Length = 1329
Score = 25.0 bits (52), Expect = 8.0
Identities = 9/14 (64%), Positives = 10/14 (71%), Gaps = 1/14 (7%)
Frame = +2
Query: 50 LPRC-WCPGTRRCI 88
L +C WCP T RCI
Sbjct: 840 LEQCMWCPSTNRCI 853
>AF235027-1|AAF68380.1| 1017|Caenorhabditis elegans guanylyl cyclase
protein.
Length = 1017
Score = 25.0 bits (52), Expect = 8.0
Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Frame = +1
Query: 73 YQKMYLDLLTIII-LSLFVIFTIIKQ 147
Y + +L+LLT+II L LF +F I Q
Sbjct: 21 YSEKHLELLTVIILLKLFGVFHRINQ 46
>AF016414-3|AAW88405.1| 329|Caenorhabditis elegans Serpentine
receptor, class h protein210, isoform b protein.
Length = 329
Score = 25.0 bits (52), Expect = 8.0
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = +1
Query: 43 LRSPALLVPW--YQKMYLDLLTIIILSLFVIFTIIKQIINS 159
L A LV W K+ ++ + IIIL + TIIKQ N+
Sbjct: 187 LTQDATLVGWSTVTKLVIEFVFIIILVVLTFNTIIKQNKNA 227
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,048,975
Number of Sequences: 27780
Number of extensions: 109524
Number of successful extensions: 352
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 344
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 352
length of database: 12,740,198
effective HSP length: 69
effective length of database: 10,823,378
effective search space used: 248937694
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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