Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_J04
         (589 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16E9.18 ||SPBC1E8.01|phosphatidylserine decarboxylase|Schizo...    31   0.16 
SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|c...    27   2.7  
SPAC6B12.08 |mug185||DNAJ domain protein Jjj family|Schizosaccha...    26   3.5  
SPCC162.10 |ppk33||serine/threonine protein kinase Ppk33 |Schizo...    26   4.7  
SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyce...    25   8.2  
SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyce...    25   8.2  
SPAC458.06 |||phosphoinositide binding protein|Schizosaccharomyc...    25   8.2  
SPBC215.11c |||aldo/keto reductase, unknown biological role|Schi...    25   8.2  
SPBC1198.02 |dea2||adenine deaminase Dea2|Schizosaccharomyces po...    25   8.2  

>SPBC16E9.18 ||SPBC1E8.01|phosphatidylserine
           decarboxylase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 437

 Score = 30.7 bits (66), Expect = 0.16
 Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
 Frame = +3

Query: 156 GGNLAHVVGFDESSVLMLGDKK--RTKESEALRATLELPSDSCIDFVQTVDGLVFSSTNY 329
           GG L  V G   S   +LGD+K  R K S A+ +   +P     +F + ++G+ +S  + 
Sbjct: 168 GGQLEQVKGITYSLDALLGDEKLARLKRSHAIPSPDHIPHIRQEEFAK-LNGIHYSLQDL 226

Query: 330 LKLDGGKRKQFLQTAA 377
           +  D G+R   ++ A+
Sbjct: 227 MGHDHGERPSHVKDAS 242


>SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1111

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +2

Query: 521 NDEAIDHICDDICYYYIFKIRA 586
           +DEA+  +C +  Y+Y F IRA
Sbjct: 674 SDEALARLCREFQYFYPFDIRA 695


>SPAC6B12.08 |mug185||DNAJ domain protein Jjj
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 380

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 11/44 (25%), Positives = 24/44 (54%)
 Frame = +3

Query: 195 SVLMLGDKKRTKESEALRATLELPSDSCIDFVQTVDGLVFSSTN 326
           ++L   DK++  E + LR    +  +  +  +QT++ + F ST+
Sbjct: 59  NILSNDDKRKWHEKDYLRNQYSVQIEDVLQHLQTIEKIPFESTS 102


>SPCC162.10 |ppk33||serine/threonine protein kinase Ppk33
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 338

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
 Frame = -3

Query: 428 CAFQH*LFPRHLLHDSVRCSLQELLSLA---SV*FQVVRRRKYETVDR 294
           C FQ   FP HLL + +R S +E  S A   S    + R +K  T+ +
Sbjct: 224 CLFQVRPFPNHLLINWIRASEEEKASSADRLSSALHISRDKKLTTISK 271


>SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1112

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 17/53 (32%), Positives = 23/53 (43%)
 Frame = +1

Query: 226 LKNQKRSEQR*NSHLTPALISFRRSTVSYFXXXXXXXXXEARESSSCRLQRTL 384
           LKNQKRSE+R    +T  +I   +  +  F         EA    S  L+  L
Sbjct: 738 LKNQKRSEKRDADEVTQVMIKECQELLRLFGLPYIVAPQEAEAQCSKLLELKL 790


>SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 747

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = +3

Query: 300 DGLVFSSTNYLKLDGGKRKQFLQTAAHAIMQKMTREQLVLECTCTYV 440
           D  + S+ N L L+ G  KQFL+ AA  ++         +  T +YV
Sbjct: 672 DAFIESAKNILILEMGSDKQFLRRAAVQLLDSCKHLPDSVITTLSYV 718


>SPAC458.06 |||phosphoinositide binding protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 364

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 6/36 (16%), Positives = 23/36 (63%)
 Frame = +2

Query: 479 EDRSCSQTKVSV*KNDEAIDHICDDICYYYIFKIRA 586
           +D +  + K+++ ++ ++++H    +C++Y + + A
Sbjct: 324 KDAAYQKLKLTIEESSKSVEHANQHVCFHYDYTLEA 359


>SPBC215.11c |||aldo/keto reductase, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 306

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = +3

Query: 147 LKCGGNLAHVVGFDESSVLMLGDKKRTKESEALRATLELPSDSCIDFVQTVD 302
           +K G  + + +GF    V   G     K+ EA  ATL+   +  I+F+ T D
Sbjct: 18  VKVGDMVVNRMGFGAMRVTGDGIWDEPKDKEACIATLKRLPELNINFIDTAD 69


>SPBC1198.02 |dea2||adenine deaminase Dea2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 367

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
 Frame = +1

Query: 418 WNAHVHTWIHSAFALL----ASRKRGQKLLADESKCIKE 522
           +N  V  W+  A A +     S KR ++LL+   KC+KE
Sbjct: 310 FNLTVKEWVFIANAAINGSWISGKRKEELLSSVQKCVKE 348


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,185,411
Number of Sequences: 5004
Number of extensions: 41026
Number of successful extensions: 131
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)