Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_J04
         (589 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_03_0307 + 17546263-17546299,17546522-17548018,17548859-175489...    33   0.17 
01_03_0200 + 13744735-13745037,13745071-13745610,13745704-137458...    29   2.7  
07_03_0874 - 22202699-22203070,22204239-22204874                       28   6.3  
03_06_0445 - 33982018-33982965,33984308-33984463                       28   6.3  
11_02_0020 + 7429898-7430131,7432565-7432669,7434535-7434621,743...    27   8.4  
02_04_0546 - 23782400-23782599,23782744-23782830,23782923-237834...    27   8.4  

>02_03_0307 +
           17546263-17546299,17546522-17548018,17548859-17548949,
           17549054-17549621,17550591-17550670,17550993-17551077,
           17551172-17551263,17551355-17551423,17551587-17551655,
           17552217-17552510,17552761-17552797,17552883-17552972,
           17553520-17553585,17553704-17553818,17553902-17553940,
           17554519-17554700
          Length = 1136

 Score = 33.1 bits (72), Expect = 0.17
 Identities = 31/102 (30%), Positives = 40/102 (39%)
 Frame = +3

Query: 198 VLMLGDKKRTKESEALRATLELPSDSCIDFVQTVDGLVFSSTNYLKLDGGKRKQFLQTAA 377
           V+  GDK   +ES    +T+ LPS  C D V   +     ST  L L     K   Q ++
Sbjct: 198 VIECGDKVAQQESSTQESTVSLPSSECGDKVAQQESSTQESTVSLPLSECGDKVAQQESS 257

Query: 378 HAIMQKMTREQLVLECTCTYVDPFRVRSACFTKERTEVARRR 503
               Q+ T    V EC           SA  T E+ E   RR
Sbjct: 258 ---TQESTVSPPVSECGDKIARQEGAASAIPTPEKVEATPRR 296


>01_03_0200 +
           13744735-13745037,13745071-13745610,13745704-13745862,
           13748992-13749123,13749282-13749472,13749541-13749792,
           13750248-13750323,13750411-13750602,13750688-13750689,
           13753230-13753287,13753736-13754941
          Length = 1036

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
 Frame = +3

Query: 150 KCGGNLAHVVGFDESSVLMLGDKKRT-KESEALRATLELPSDSCIDFVQTVDGLVFSSTN 326
           + GG+LA++V      VL   D+    K  EAL+  +E   D  ++F+  V  L+F    
Sbjct: 767 RAGGDLANLV--HPGDVLHTTDELTDRKRREALQKAMEGKLDESLEFLAGVTALLFLGLE 824

Query: 327 YLKLDG 344
            L L+G
Sbjct: 825 GLALEG 830


>07_03_0874 - 22202699-22203070,22204239-22204874
          Length = 335

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 15/36 (41%), Positives = 22/36 (61%)
 Frame = -1

Query: 247 LSASDSLVLFLSPSIRTDDSSNPTTCARFPPHLSSG 140
           ++A+  L L L+PS  TD  S P + A+ P + SSG
Sbjct: 5   VAAALLLALLLAPSAATDVPSYPLSQAQSPANTSSG 40


>03_06_0445 - 33982018-33982965,33984308-33984463
          Length = 367

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
 Frame = +3

Query: 228 KESEALRATLELP-SDSCIDFVQTVDGLVFSSTNYLKLDGGKRKQFLQTAAHAIMQKMTR 404
           K ++A     + P +D C+D ++ + GL  ++   +    GKR ++L    H+ +Q M  
Sbjct: 14  KAADAAAGADDSPEADRCLDAMRRLRGLRVTTDVLVSTQVGKRLRYLTKHPHSDIQSMAT 73

Query: 405 EQL 413
           + L
Sbjct: 74  DLL 76


>11_02_0020 +
           7429898-7430131,7432565-7432669,7434535-7434621,
           7435188-7435241,7435338-7435483,7435593-7435719,
           7436200-7436208
          Length = 253

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +3

Query: 360 FLQTAAHAIMQKMTREQLVLECTCTYVDP 446
           +L+ +A+A    +TREQL  + TC  V P
Sbjct: 151 YLEESAYASQVLLTREQLERQYTCNEVQP 179


>02_04_0546 -
           23782400-23782599,23782744-23782830,23782923-23783442,
           23783801-23784000,23784457-23784561,23784923-23785020,
           23785168-23785271
          Length = 437

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
 Frame = +2

Query: 305 SRIFVDELLE---TRRRQEKAVPADCSARYHAEDDEGTTSAGMHMYIRGSIPRSL 460
           +R+F+  LLE   +  + +  V A+CS+      +E +TS G H  ++ S  + +
Sbjct: 298 ARVFMQNLLEVPCSENKSDSQVAANCSSEDIDPANESSTSNGNHSDVQESCHKDI 352


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,536,903
Number of Sequences: 37544
Number of extensions: 283563
Number of successful extensions: 823
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 803
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 822
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1388195172
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)