Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_J04
         (589 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U49830-13|AAK31474.1|  826|Caenorhabditis elegans Hypothetical p...    32   0.35 
Z29095-2|CAD18875.1| 2056|Caenorhabditis elegans Hypothetical pr...    30   1.4  
Z29095-1|CAA82353.2| 2045|Caenorhabditis elegans Hypothetical pr...    30   1.4  
Z19155-4|CAA79560.3|  844|Caenorhabditis elegans Hypothetical pr...    29   1.9  
Z81449-4|CAB03765.1|  811|Caenorhabditis elegans Hypothetical pr...    29   2.4  
Z72512-8|CAH04717.1|  583|Caenorhabditis elegans Hypothetical pr...    29   2.4  
Z72512-7|CAA96668.3|  568|Caenorhabditis elegans Hypothetical pr...    29   2.4  
Z81116-12|CAB03309.1|  414|Caenorhabditis elegans Hypothetical p...    28   5.7  
U41015-4|AAA82313.1|  317|Caenorhabditis elegans Hypothetical pr...    27   7.5  
Z50797-3|CAC35828.1|  802|Caenorhabditis elegans Hypothetical pr...    27   9.9  
Z50797-2|CAA90672.1|  800|Caenorhabditis elegans Hypothetical pr...    27   9.9  
Z46266-5|CAA86412.1|  375|Caenorhabditis elegans Hypothetical pr...    27   9.9  
AF000198-6|AAB53056.2|  526|Caenorhabditis elegans Calcium chann...    27   9.9  

>U49830-13|AAK31474.1|  826|Caenorhabditis elegans Hypothetical
           protein C33F10.2 protein.
          Length = 826

 Score = 31.9 bits (69), Expect = 0.35
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +2

Query: 317 VDELLETRRRQEKAVPADCSARYHAEDDEGTT 412
           +DE+++  R  EK +P  C+ R HA   +GT+
Sbjct: 673 IDEIIKNSRGYEKLIPPSCTFRAHASPWKGTS 704


>Z29095-2|CAD18875.1| 2056|Caenorhabditis elegans Hypothetical
           protein R10E11.1b protein.
          Length = 2056

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 19/41 (46%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
 Frame = -1

Query: 286 KSMQESDGSSNV-ALSASDSLVLFLSPSIRTDDSSNPTTCA 167
           KS  +SD  S + ALSA +SL  F + S  TD  +NP+T A
Sbjct: 8   KSRADSDYDSGLDALSALESLEAFPTSSKDTDVDNNPSTSA 48


>Z29095-1|CAA82353.2| 2045|Caenorhabditis elegans Hypothetical
           protein R10E11.1a protein.
          Length = 2045

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 19/41 (46%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
 Frame = -1

Query: 286 KSMQESDGSSNV-ALSASDSLVLFLSPSIRTDDSSNPTTCA 167
           KS  +SD  S + ALSA +SL  F + S  TD  +NP+T A
Sbjct: 8   KSRADSDYDSGLDALSALESLEAFPTSSKDTDVDNNPSTSA 48


>Z19155-4|CAA79560.3|  844|Caenorhabditis elegans Hypothetical
           protein F54G8.5 protein.
          Length = 844

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -1

Query: 460 ERTRNGSTYVHVHSSTSCSLVIFCMIACAAV 368
           E  RNG   +     TS  LV+FCM AC+++
Sbjct: 256 EMERNGELLIPWMPWTSLVLVVFCMFACSSL 286


>Z81449-4|CAB03765.1|  811|Caenorhabditis elegans Hypothetical
           protein C46F11.4 protein.
          Length = 811

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 16/35 (45%), Positives = 21/35 (60%)
 Frame = +2

Query: 299 RRSRIFVDELLETRRRQEKAVPADCSARYHAEDDE 403
           RR RI+ DE LE     EK  PA  S++  A+DD+
Sbjct: 85  RRKRIYDDEYLEGGSDDEK--PASSSSKLAADDDD 117


>Z72512-8|CAH04717.1|  583|Caenorhabditis elegans Hypothetical
           protein R07B5.8b protein.
          Length = 583

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
 Frame = +3

Query: 228 KESEALRATLELPSDSCIDFVQ-----TVDGLVFSSTNYLKLDGGKRKQFLQTAAHAIMQ 392
           +ESEA + T       C+D+V      ++DG    S   ++ D  +RK   +T  H  M+
Sbjct: 428 RESEASKETKVQYDPECLDWVPRKMRPSMDGYHELSKEEIEQDEQRRKSIQKTPVHVSME 487

Query: 393 KMT 401
           K T
Sbjct: 488 KAT 490


>Z72512-7|CAA96668.3|  568|Caenorhabditis elegans Hypothetical
           protein R07B5.8a protein.
          Length = 568

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
 Frame = +3

Query: 228 KESEALRATLELPSDSCIDFVQ-----TVDGLVFSSTNYLKLDGGKRKQFLQTAAHAIMQ 392
           +ESEA + T       C+D+V      ++DG    S   ++ D  +RK   +T  H  M+
Sbjct: 473 RESEASKETKVQYDPECLDWVPRKMRPSMDGYHELSKEEIEQDEQRRKSIQKTPVHVSME 532

Query: 393 KMT 401
           K T
Sbjct: 533 KAT 535


>Z81116-12|CAB03309.1|  414|Caenorhabditis elegans Hypothetical
           protein T06C12.13 protein.
          Length = 414

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +3

Query: 189 ESSVLMLGDKKRTKESEALRATLELPSDSCIDFVQTVD 302
           E SV M G++  TK   A+     +  DSCID+ +  D
Sbjct: 248 EMSVKMFGNQVLTKRKFAISNEKLMVMDSCIDYSEITD 285


>U41015-4|AAA82313.1|  317|Caenorhabditis elegans Hypothetical
           protein F20B6.5 protein.
          Length = 317

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
 Frame = -1

Query: 466 QAERTRNGSTYVHVHSSTSCSLV---IFCMIACAAVCRNCFL 350
           Q +  R+ +T  H+H  T+C  V   I CMI        C+L
Sbjct: 274 QGQMIRSMNTLAHLHKCTTCQTVAQKIDCMILSLKTYIGCYL 315


>Z50797-3|CAC35828.1|  802|Caenorhabditis elegans Hypothetical
           protein T22H6.2b protein.
          Length = 802

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +3

Query: 282 DFVQTVDGLVFSSTNYLKLDGGKRKQFLQTAAHAIMQK 395
           D +  V  L  +S N L L GGK  +    A HA++Q+
Sbjct: 479 DCLPQVASLAMASGNALLLKGGKEAEESNKALHALVQE 516


>Z50797-2|CAA90672.1|  800|Caenorhabditis elegans Hypothetical
           protein T22H6.2a protein.
          Length = 800

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +3

Query: 282 DFVQTVDGLVFSSTNYLKLDGGKRKQFLQTAAHAIMQK 395
           D +  V  L  +S N L L GGK  +    A HA++Q+
Sbjct: 477 DCLPQVASLAMASGNALLLKGGKEAEESNKALHALVQE 514


>Z46266-5|CAA86412.1|  375|Caenorhabditis elegans Hypothetical
           protein C07B5.5 protein.
          Length = 375

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +2

Query: 320 DELLETRRRQEKAVPADCSARYHAED 397
           D ++ET RR  + +P DC   YHA D
Sbjct: 279 DLVVETWRRGSE-IPLDCKLTYHAND 303


>AF000198-6|AAB53056.2|  526|Caenorhabditis elegans Calcium channel,
           beta subunit protein1 protein.
          Length = 526

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 17/61 (27%), Positives = 29/61 (47%)
 Frame = +2

Query: 317 VDELLETRRRQEKAVPADCSARYHAEDDEGTTSAGMHMYIRGSIPRSLCLLHEREDRSCS 496
           ++ + E  R  +  V  DC    H      T+ A +H+YI+ S P+ L  L +   +S S
Sbjct: 278 IERIFELARSMQLVV-LDCDTINHPSQLAKTSLAPIHVYIKISSPKVLQRLIKSRGKSQS 336

Query: 497 Q 499
           +
Sbjct: 337 R 337


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,350,238
Number of Sequences: 27780
Number of extensions: 241832
Number of successful extensions: 766
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 738
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 764
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1237082886
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)