Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_J02
         (518 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8 |Schizosacch...    42   4e-05
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom...    37   0.002
SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces p...    31   0.10 
SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    29   0.42 
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc...    28   0.73 
SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    27   1.3  
SPBC13E7.02 |cwf24||GCN5-related N acetyltransferase|Schizosacch...    27   1.7  
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    25   5.1  

>SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 269

 Score = 42.3 bits (95), Expect = 4e-05
 Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 6/46 (13%)
 Frame = +3

Query: 168 CVVCTDNPKEIILLPCGHVCLCEDC------SDNITGNCPVCREKI 287
           CV+C D+P+ +   PCGH+  C  C      +   T  CPVCR K+
Sbjct: 206 CVICLDSPENLSCTPCGHI-FCNFCILSALGTTAATQKCPVCRRKV 250


>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1375

 Score = 36.7 bits (81), Expect = 0.002
 Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
 Frame = +3

Query: 162  QLCVVCTDNPKEIILLPCGHV-C-LCEDCSDNITGNCPVCREKIDSRAPAFI 311
            Q+C++C D  K+  +  CGH+ C  C +     + +CP+C+ K++     +I
Sbjct: 1090 QICIICRDIIKQGFITTCGHLYCSFCLEAWLKHSSSCPMCKTKLNKNNAYYI 1141


>SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1040

 Score = 31.1 bits (67), Expect = 0.10
 Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 17/59 (28%)
 Frame = +3

Query: 168 CVVCTDNPKEI-ILLPCGHVCLCEDC----------------SDNITGNCPVCREKIDS 293
           C +C D   E+ I++PCGH  LC +C                ++NI+  C VC E ID+
Sbjct: 746 CSLCMDVVAELLIIVPCGHF-LCRECLTHVITSSEDMAKQTSNENISPKCSVCEEYIDT 803


>SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 513

 Score = 29.1 bits (62), Expect = 0.42
 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 6/47 (12%)
 Frame = +3

Query: 168 CVVCTDNPK---EIILLPCGHVCLCEDCSD---NITGNCPVCREKID 290
           C +C +  K   ++I LPC H    E+C      + G C +CR  +D
Sbjct: 396 CTICMEMFKINDDVIQLPCKHY-FHENCIKPWLRVNGTCAICRAPVD 441


>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 732

 Score = 28.3 bits (60), Expect = 0.73
 Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 5/51 (9%)
 Frame = +3

Query: 156 DLQLCVVCTDNPKEIILLPCGHVCLCEDCSDNI-----TGNCPVCREKIDS 293
           D Q+C +C +      +LPC H  +C  C+  +     T  C  C+ + D+
Sbjct: 77  DEQICFICAEGITYSCVLPCNH-RMCHVCALRLRALYKTKECTFCKTEWDT 126


>SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 547

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 6/54 (11%)
 Frame = +3

Query: 150 LPDLQLCVVCTDNPKE----IILLPCGHVCLCEDCSDNITGNCPVCR--EKIDS 293
           L +L  CVVC +        +I + C H   C         +CPVCR  +K+ S
Sbjct: 202 LIELPTCVVCLERMDSSITGLITIVCQHTFHCPCLQKWGNSSCPVCRYTQKVQS 255


>SPBC13E7.02 |cwf24||GCN5-related N
           acetyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 533

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = +3

Query: 165 LCVVCTDNPKEIILLPCGHVCLCEDCSDNITGNCPVC 275
           +C++C  + +  I   CGH   CE C+       P C
Sbjct: 253 VCLICKKDYRSPIATTCGH-HFCEQCAITRYRKTPTC 288


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2052

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 8/19 (42%), Positives = 15/19 (78%)
 Frame = +3

Query: 246  DNITGNCPVCREKIDSRAP 302
            ++I GNC +C+E+ + +AP
Sbjct: 1333 EHIRGNCLLCQEECNDQAP 1351


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,926,827
Number of Sequences: 5004
Number of extensions: 36143
Number of successful extensions: 90
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 210309424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)