Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_J01
         (531 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1259.01c |rps1802|rps18-2, SPCC825.06c|40S ribosomal protein...   153   1e-38
SPBC16D10.11c |rps1801|rps18-1|40S ribosomal protein S18|Schizos...   153   1e-38
SPCC1795.07 |||mitochondrial ribosomal protein subunit S37 |Schi...    29   0.43 
SPAC13G7.04c |mac1||membrane anchored protein Mac1 |Schizosaccha...    27   2.3  
SPBC8E4.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   3.0  
SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1 |Sc...    25   5.3  

>SPCC1259.01c |rps1802|rps18-2, SPCC825.06c|40S ribosomal protein
           S18|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 152

 Score =  153 bits (372), Expect = 1e-38
 Identities = 69/89 (77%), Positives = 79/89 (88%)
 Frame = +3

Query: 45  MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECT 224
           MSLV+PD FQHILR++NTN+DGK KVMFAMT IKGVGRRY+NIV KKADID+ KRAGE T
Sbjct: 1   MSLVVPDNFQHILRLLNTNVDGKVKVMFAMTQIKGVGRRYANIVCKKADIDMSKRAGELT 60

Query: 225 EEEVEKIVTIMSNPRQYKIPDWFLNRQKD 311
            EE+E+IVTI+ NP Q+KIP WFLNRQKD
Sbjct: 61  TEELERIVTIIQNPSQFKIPSWFLNRQKD 89



 Score = 66.5 bits (155), Expect = 2e-12
 Identities = 33/60 (55%), Positives = 41/60 (68%)
 Frame = +1

Query: 259 QTPGNTKYQTGFSTDKRIIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRV 438
           Q P   K  + F   ++ I DGK  QL ++N+DSKLREDLERLKKI+ HRG+RH   LRV
Sbjct: 72  QNPSQFKIPSWFLNRQKDINDGKSFQLLANNVDSKLREDLERLKKIQTHRGLRHALDLRV 131


>SPBC16D10.11c |rps1801|rps18-1|40S ribosomal protein
           S18|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 152

 Score =  153 bits (372), Expect = 1e-38
 Identities = 69/89 (77%), Positives = 79/89 (88%)
 Frame = +3

Query: 45  MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECT 224
           MSLV+PD FQHILR++NTN+DGK KVMFAMT IKGVGRRY+NIV KKADID+ KRAGE T
Sbjct: 1   MSLVVPDNFQHILRLLNTNVDGKVKVMFAMTQIKGVGRRYANIVCKKADIDMSKRAGELT 60

Query: 225 EEEVEKIVTIMSNPRQYKIPDWFLNRQKD 311
            EE+E+IVTI+ NP Q+KIP WFLNRQKD
Sbjct: 61  TEELERIVTIIQNPSQFKIPSWFLNRQKD 89



 Score = 66.5 bits (155), Expect = 2e-12
 Identities = 33/60 (55%), Positives = 41/60 (68%)
 Frame = +1

Query: 259 QTPGNTKYQTGFSTDKRIIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRV 438
           Q P   K  + F   ++ I DGK  QL ++N+DSKLREDLERLKKI+ HRG+RH   LRV
Sbjct: 72  QNPSQFKIPSWFLNRQKDINDGKSFQLLANNVDSKLREDLERLKKIQTHRGLRHALDLRV 131


>SPCC1795.07 |||mitochondrial ribosomal protein subunit S37
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 151

 Score = 29.1 bits (62), Expect = 0.43
 Identities = 13/22 (59%), Positives = 15/22 (68%)
 Frame = +1

Query: 373 DLERLKKIRAHRGMRHYWGLRV 438
           D+ RL  IR +RGMRH  GL V
Sbjct: 76  DISRLVNIRCYRGMRHVNGLPV 97


>SPAC13G7.04c |mac1||membrane anchored protein Mac1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 756

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 17/65 (26%), Positives = 29/65 (44%)
 Frame = +1

Query: 199 LTSVQENAXXXXXXXXXQSCQTPGNTKYQTGFSTDKRIIVDGKYSQLTSSNLDSKLREDL 378
           LTS  E            + Q PG+ KY TG+ +     V  + ++L+S +  S +  D 
Sbjct: 223 LTSTSEFGPPSDSGDTVGTTQYPGDIKYATGYESTVASPVPSRVAKLSSRDTPS-IIADY 281

Query: 379 ERLKK 393
           +  +K
Sbjct: 282 DEFRK 286


>SPBC8E4.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 129

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
 Frame = -3

Query: 493 WTHQQFYLFCLWS*CVDHGHADP-SSDAYPYEHGSSSAFPNLHEAWSLNWKK 341
           + +Q   +FC+W+ C++    +P  S  Y +E G        H   S+  KK
Sbjct: 38  YRNQLIRVFCVWA-CIELHSINPWYSGMYTFETGRLLVLKQRHRVLSMELKK 88


>SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 762

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +3

Query: 108 GKRKVMFAMTAIKGVGRRYSNIVLKKADIDL 200
           GK+KV+     I  + R+YSN+  +KA+  L
Sbjct: 10  GKKKVIGNRQCILSLYRKYSNVQSRKAEDQL 40


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,016,934
Number of Sequences: 5004
Number of extensions: 38346
Number of successful extensions: 114
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 218398248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)