Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_J01
(531 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0527 + 3915670-3915821,3916866-3917054,3917477-3917582 141 4e-34
07_01_0525 + 3904388-3904390,3904485-3904645,3905347-3905394,390... 130 7e-31
03_06_0283 - 32832572-32832677,32833343-32833531,32833582-328337... 128 2e-30
07_01_0531 + 3928833-3928867,3930848-3930943,3931873-3931978 72 3e-13
03_05_0839 + 28097780-28097878,28098573-28098782,28099196-28099372 31 0.58
03_01_0404 + 3138624-3140096 31 0.58
04_04_1697 - 35454337-35454576,35454657-35454888,35455045-354552... 27 7.1
04_01_0150 + 1741639-1741742,1742432-1742543,1742856-1743594,174... 27 9.4
>07_01_0527 + 3915670-3915821,3916866-3917054,3917477-3917582
Length = 148
Score = 141 bits (341), Expect = 4e-34
Identities = 56/84 (66%), Positives = 79/84 (94%)
Frame = +3
Query: 63 DKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEK 242
+ FQHILR++NTN+DGK+K+MFA+T+IKG+GRR+SNI KKADID++KRAGE T EE+E+
Sbjct: 3 EDFQHILRLLNTNVDGKQKIMFALTSIKGIGRRFSNIACKKADIDMNKRAGELTPEELER 62
Query: 243 IVTIMSNPRQYKIPDWFLNRQKDH 314
++T+++NPRQ+K+PDWFLNR+KD+
Sbjct: 63 LMTVVANPRQFKVPDWFLNRKKDY 86
Score = 73.7 bits (173), Expect = 8e-14
Identities = 34/58 (58%), Positives = 41/58 (70%)
Frame = +1
Query: 265 PGNTKYQTGFSTDKRIIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRV 438
P K F K+ DG++SQ+ S+ LD KLR+DLERLKKIR HRG+RHYWGLRV
Sbjct: 70 PRQFKVPDWFLNRKKDYKDGRFSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRV 127
>07_01_0525 +
3904388-3904390,3904485-3904645,3905347-3905394,
3905714-3905902,3906872-3906977
Length = 168
Score = 130 bits (314), Expect = 7e-31
Identities = 60/106 (56%), Positives = 83/106 (78%), Gaps = 16/106 (15%)
Frame = +3
Query: 45 MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKR----- 209
MSL+ + FQHILR++NTN+DGK+K+MFA+T+IKGVGRR+SNI KKADID++KR
Sbjct: 1 MSLIAGEDFQHILRLLNTNVDGKQKIMFALTSIKGVGRRFSNIACKKADIDMNKRSGVVC 60
Query: 210 -----------AGECTEEEVEKIVTIMSNPRQYKIPDWFLNRQKDH 314
AGE T EE+E+++T+++NPRQ+K+PDWFLNR+KD+
Sbjct: 61 YYLAVHNYVEWAGELTPEELERLMTVVANPRQFKVPDWFLNRKKDY 106
Score = 73.7 bits (173), Expect = 8e-14
Identities = 34/58 (58%), Positives = 41/58 (70%)
Frame = +1
Query: 265 PGNTKYQTGFSTDKRIIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRV 438
P K F K+ DG++SQ+ S+ LD KLR+DLERLKKIR HRG+RHYWGLRV
Sbjct: 90 PRQFKVPDWFLNRKKDYKDGRFSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRV 147
>03_06_0283 -
32832572-32832677,32833343-32833531,32833582-32833796,
32833900-32833902
Length = 170
Score = 128 bits (310), Expect = 2e-30
Identities = 60/108 (55%), Positives = 83/108 (76%), Gaps = 18/108 (16%)
Frame = +3
Query: 45 MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKR----- 209
MSL+ + FQHILR++NTN+DGK+K+MFA+T+IKGVGRR+SNI KKADID++KR
Sbjct: 1 MSLIAGEDFQHILRLLNTNVDGKQKIMFALTSIKGVGRRFSNIACKKADIDMNKRQEPPP 60
Query: 210 -------------AGECTEEEVEKIVTIMSNPRQYKIPDWFLNRQKDH 314
AGE T EE+E+++T+++NPRQ+K+PDWFLNR+KD+
Sbjct: 61 PPSRRQISVMVGGAGELTPEELERLMTVVANPRQFKVPDWFLNRKKDY 108
Score = 73.7 bits (173), Expect = 8e-14
Identities = 34/58 (58%), Positives = 41/58 (70%)
Frame = +1
Query: 265 PGNTKYQTGFSTDKRIIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRV 438
P K F K+ DG++SQ+ S+ LD KLR+DLERLKKIR HRG+RHYWGLRV
Sbjct: 92 PRQFKVPDWFLNRKKDYKDGRFSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRV 149
>07_01_0531 + 3928833-3928867,3930848-3930943,3931873-3931978
Length = 78
Score = 71.7 bits (168), Expect = 3e-13
Identities = 31/45 (68%), Positives = 38/45 (84%)
Frame = +1
Query: 304 KRIIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRV 438
K+ DG++SQ+ S+ LD KLR+DLERLKKIR HRG+RHYWGLRV
Sbjct: 13 KKDYKDGRFSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRV 57
>03_05_0839 + 28097780-28097878,28098573-28098782,28099196-28099372
Length = 161
Score = 31.1 bits (67), Expect = 0.58
Identities = 14/24 (58%), Positives = 18/24 (75%)
Frame = +1
Query: 367 REDLERLKKIRAHRGMRHYWGLRV 438
R +ERLK+IR +RG+RH GL V
Sbjct: 108 RVAIERLKEIRCYRGIRHKLGLPV 131
>03_01_0404 + 3138624-3140096
Length = 490
Score = 31.1 bits (67), Expect = 0.58
Identities = 13/33 (39%), Positives = 22/33 (66%)
Frame = +1
Query: 319 DGKYSQLTSSNLDSKLREDLERLKKIRAHRGMR 417
+G Y QL++ LDS ++D R++K+ RG+R
Sbjct: 403 EGVYVQLSNIYLDSNRKDDARRVRKLIGSRGIR 435
>04_04_1697 -
35454337-35454576,35454657-35454888,35455045-35455252,
35455380-35455629,35456232-35456354
Length = 350
Score = 27.5 bits (58), Expect = 7.1
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Frame = -3
Query: 286 SGIL-YCLGFDMIVTIFSTSSSVHSPARLSRSISAFFNTMLEYRRP-TPLIAVIANITL 116
SG+L +CL F + I ST++ + A + A + L +R P +P+ A+ ITL
Sbjct: 241 SGVLAFCLNFSIFYVIHSTTAVTFNVAGNLKVAVAVLVSWLIFRNPISPMNAIGCAITL 299
>04_01_0150 + 1741639-1741742,1742432-1742543,1742856-1743594,
1743724-1743776,1743914-1743991,1744107-1744405,
1744660-1745476,1745576-1745842,1745987-1746181,
1746287-1746372,1746469-1746657,1747138-1747207,
1747399-1747552,1747706-1747832,1749158-1749254
Length = 1128
Score = 27.1 bits (57), Expect = 9.4
Identities = 14/53 (26%), Positives = 24/53 (45%)
Frame = +3
Query: 195 DLDKRAGECTEEEVEKIVTIMSNPRQYKIPDWFLNRQKDHC*WQIQPVDFFQF 353
D + R E EE ++ +I N + D N D+C +++PV +F
Sbjct: 1033 DQNPREAEMIEEAPVQLFSITQNQEMRDVEDTNRNTTNDYCVKRLEPVIGMEF 1085
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,686,437
Number of Sequences: 37544
Number of extensions: 236318
Number of successful extensions: 700
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 681
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 700
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1178343540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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