Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_J01
         (531 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z99281-11|CAB16517.1|  154|Caenorhabditis elegans Hypothetical p...   146   1e-35
Z69662-3|CAA93502.1|  449|Caenorhabditis elegans Hypothetical pr...    31   0.52 
Z71266-7|CAA95845.1|  987|Caenorhabditis elegans Hypothetical pr...    30   0.90 

>Z99281-11|CAB16517.1|  154|Caenorhabditis elegans Hypothetical
           protein Y57G11C.16 protein.
          Length = 154

 Score =  146 bits (353), Expect = 1e-35
 Identities = 64/89 (71%), Positives = 79/89 (88%)
 Frame = +3

Query: 45  MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECT 224
           MSL+IP+KFQHI R+MNTNIDG RKV +A+TAIKGVGRR++ +  +KAD+D++KRAGE T
Sbjct: 1   MSLIIPEKFQHIHRVMNTNIDGNRKVPYALTAIKGVGRRFAFVCCRKADVDVNKRAGELT 60

Query: 225 EEEVEKIVTIMSNPRQYKIPDWFLNRQKD 311
           EE+ +KIVTIM NP QYKIP+WFLNRQKD
Sbjct: 61  EEDFDKIVTIMQNPSQYKIPNWFLNRQKD 89



 Score = 76.2 bits (179), Expect = 1e-14
 Identities = 35/60 (58%), Positives = 42/60 (70%)
 Frame = +1

Query: 259 QTPGNTKYQTGFSTDKRIIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRV 438
           Q P   K    F   ++ I DGK  QL S+ +D+KLREDLER+KKIR HRG+RHYWGLRV
Sbjct: 72  QNPSQYKIPNWFLNRQKDIKDGKTGQLLSTAVDNKLREDLERMKKIRLHRGLRHYWGLRV 131


>Z69662-3|CAA93502.1|  449|Caenorhabditis elegans Hypothetical
           protein F56D5.3 protein.
          Length = 449

 Score = 31.1 bits (67), Expect = 0.52
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = -3

Query: 493 WTHQQFYLFCLWS*CVDHGHADPSSDAYPYEHGSSSAFPNLHEAWSLNWKK 341
           W H QF +    + CVD  + + + +A  ++ G SS   NL   W+   K+
Sbjct: 65  WGHGQFGMIITGNVCVDPINLEAAGNAIIFKEGESSKRRNLFSQWAQKIKQ 115


>Z71266-7|CAA95845.1|  987|Caenorhabditis elegans Hypothetical protein
            R06C7.8 protein.
          Length = 987

 Score = 30.3 bits (65), Expect = 0.90
 Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
 Frame = +1

Query: 289  GFSTDKRIIVDGKYSQLTSSNL-DSKLREDLERLKKIR 399
            GF+    ++V GKY+QLT +++ D  L  D++R   +R
Sbjct: 890  GFAATMAVVVAGKYAQLTGASVGDYSLNVDIKRRNILR 927


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,171,927
Number of Sequences: 27780
Number of extensions: 217405
Number of successful extensions: 615
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 611
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 615
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1049512662
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)