Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_I24
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D86741-2|BAA21841.1|   92|Caenorhabditis elegans ATP synthase su...    79   1e-15
D86740-2|BAA13165.1|   92|Caenorhabditis elegans ATP synthase su...    79   1e-15
AC090999-18|AAK26152.1|  116|Caenorhabditis elegans Hypothetical...    79   1e-15
U88311-7|AAB42348.1| 1173|Caenorhabditis elegans Lethal protein ...    30   1.2  
U85515-1|AAB42081.1| 1173|Caenorhabditis elegans LET-502 protein.      30   1.2  
Z68011-3|CAA92014.2|  821|Caenorhabditis elegans Hypothetical pr...    29   2.0  
U88179-1|AAB52661.3|  216|Caenorhabditis elegans Hypothetical pr...    29   2.0  
Z68105-2|CAA92118.1|  270|Caenorhabditis elegans Hypothetical pr...    28   4.7  
Z67884-5|CAA91810.1| 1787|Caenorhabditis elegans Hypothetical pr...    27   6.2  
Z67881-4|CAA91798.1| 1787|Caenorhabditis elegans Hypothetical pr...    27   6.2  
AF308444-1|AAG29837.1| 1787|Caenorhabditis elegans CHD-3 protein.      27   6.2  
U41996-5|AAA83474.1|  296|Caenorhabditis elegans Hypothetical pr...    27   8.1  
U13071-2|AAL65793.1|  988|Caenorhabditis elegans Hypothetical pr...    27   8.1  

>D86741-2|BAA21841.1|   92|Caenorhabditis elegans ATP synthase
           subunit protein.
          Length = 92

 Score = 79.4 bits (187), Expect = 1e-15
 Identities = 40/70 (57%), Positives = 43/70 (61%)
 Frame = +1

Query: 211 AVRTFQTTSVTKDIDSAAKFXXXXXXXXXXXXXXXXXXXXFGSLIIGYARNPSLKQQLFS 390
           A R   TT   KDIDSAAK+                    FG+L+IGYARNPSLKQQLFS
Sbjct: 6   AARMISTTVARKDIDSAAKYIGAGAATVGVAGSGAGIGNVFGALVIGYARNPSLKQQLFS 65

Query: 391 YAILGFALSE 420
           YAILGFALSE
Sbjct: 66  YAILGFALSE 75


>D86740-2|BAA13165.1|   92|Caenorhabditis elegans ATP synthase
           subunit protein.
          Length = 92

 Score = 79.4 bits (187), Expect = 1e-15
 Identities = 40/70 (57%), Positives = 43/70 (61%)
 Frame = +1

Query: 211 AVRTFQTTSVTKDIDSAAKFXXXXXXXXXXXXXXXXXXXXFGSLIIGYARNPSLKQQLFS 390
           A R   TT   KDIDSAAK+                    FG+L+IGYARNPSLKQQLFS
Sbjct: 6   AARMISTTVARKDIDSAAKYIGAGAATVGVAGSGAGIGNVFGALVIGYARNPSLKQQLFS 65

Query: 391 YAILGFALSE 420
           YAILGFALSE
Sbjct: 66  YAILGFALSE 75


>AC090999-18|AAK26152.1|  116|Caenorhabditis elegans Hypothetical
           protein Y82E9BR.3 protein.
          Length = 116

 Score = 79.4 bits (187), Expect = 1e-15
 Identities = 40/70 (57%), Positives = 43/70 (61%)
 Frame = +1

Query: 211 AVRTFQTTSVTKDIDSAAKFXXXXXXXXXXXXXXXXXXXXFGSLIIGYARNPSLKQQLFS 390
           A R   TT   KDIDSAAK+                    FG+L+IGYARNPSLKQQLFS
Sbjct: 30  AARMISTTVARKDIDSAAKYIGAGAATVGVAGSGAGIGNVFGALVIGYARNPSLKQQLFS 89

Query: 391 YAILGFALSE 420
           YAILGFALSE
Sbjct: 90  YAILGFALSE 99


>U88311-7|AAB42348.1| 1173|Caenorhabditis elegans Lethal protein 502
            protein.
          Length = 1173

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = -3

Query: 171  CRHCCEWSHKSCVAEDSSPGCRGDQSCGIQHFCVLRGATTDN 46
            C++C   +HK  VA+ S P CR   + G+    VL    TDN
Sbjct: 1092 CKNCHFKTHKDHVAQGSLPMCR--YNTGLSRELVLMAPQTDN 1131


>U85515-1|AAB42081.1| 1173|Caenorhabditis elegans LET-502 protein.
          Length = 1173

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = -3

Query: 171  CRHCCEWSHKSCVAEDSSPGCRGDQSCGIQHFCVLRGATTDN 46
            C++C   +HK  VA+ S P CR   + G+    VL    TDN
Sbjct: 1092 CKNCHFKTHKDHVAQGSLPMCR--YNTGLSRELVLMAPQTDN 1131


>Z68011-3|CAA92014.2|  821|Caenorhabditis elegans Hypothetical
           protein T21B6.3 protein.
          Length = 821

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 19/60 (31%), Positives = 26/60 (43%)
 Frame = -3

Query: 180 LCVCRHCCEWSHKSCVAEDSSPGCRGDQSCGIQHFCVLRGATTDNKEHREGGDRPLESSC 1
           LC  + CC WS + C        C G QS   +  C+    + D+  H +G DR  E  C
Sbjct: 698 LCEGQSCCNWS-EWCHWSMCDKECGGGQSIRTR-TCLNSAGSPDSSCHCDGPDRE-EKEC 754


>U88179-1|AAB52661.3|  216|Caenorhabditis elegans Hypothetical
           protein R57.2 protein.
          Length = 216

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 11/47 (23%), Positives = 20/47 (42%)
 Frame = -3

Query: 171 CRHCCEWSHKSCVAEDSSPGCRGDQSCGIQHFCVLRGATTDNKEHRE 31
           C H C +     V  +     R D  C I+H   +    + N+++R+
Sbjct: 113 CHHMCVYETDQSVTRNMLTNMRKDSQCRIKHLSSILYCASQNRDNRK 159


>Z68105-2|CAA92118.1|  270|Caenorhabditis elegans Hypothetical
           protein F13E6.3 protein.
          Length = 270

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -3

Query: 177 CVCRHCCEWSHKSCV 133
           C C+ C +WSH +CV
Sbjct: 236 CKCKGCDQWSHLTCV 250


>Z67884-5|CAA91810.1| 1787|Caenorhabditis elegans Hypothetical
           protein T14G8.1 protein.
          Length = 1787

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
 Frame = -3

Query: 240 DRGGLEGAHS**LSRCNWNN-LCVCRHCCEWSHKSCVAEDSSPGCRGDQSC 91
           ++G +E  H      CN +  L +C  C    H +C+ E+      GD SC
Sbjct: 256 EQGVVEENHQENCEVCNQDGELMLCDTCTRAYHVACIDENMEQPPEGDWSC 306


>Z67881-4|CAA91798.1| 1787|Caenorhabditis elegans Hypothetical
           protein T14G8.1 protein.
          Length = 1787

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
 Frame = -3

Query: 240 DRGGLEGAHS**LSRCNWNN-LCVCRHCCEWSHKSCVAEDSSPGCRGDQSC 91
           ++G +E  H      CN +  L +C  C    H +C+ E+      GD SC
Sbjct: 256 EQGVVEENHQENCEVCNQDGELMLCDTCTRAYHVACIDENMEQPPEGDWSC 306


>AF308444-1|AAG29837.1| 1787|Caenorhabditis elegans CHD-3 protein.
          Length = 1787

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
 Frame = -3

Query: 240 DRGGLEGAHS**LSRCNWNN-LCVCRHCCEWSHKSCVAEDSSPGCRGDQSC 91
           ++G +E  H      CN +  L +C  C    H +C+ E+      GD SC
Sbjct: 256 EQGVVEENHQENCEVCNQDGELMLCDTCTRAYHVACIDENMEQPPEGDWSC 306


>U41996-5|AAA83474.1|  296|Caenorhabditis elegans Hypothetical
           protein F38E1.6 protein.
          Length = 296

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +2

Query: 116 GLLSSATQLLCDHSQQCLHTHRLFQLHLLNY 208
           G+L S  +++ DH  QC H++  + L L N+
Sbjct: 85  GILKSVEEII-DHELQCAHSYSYYILVLANF 114


>U13071-2|AAL65793.1|  988|Caenorhabditis elegans Hypothetical
           protein T22F7.3 protein.
          Length = 988

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = -3

Query: 198 RCNWNNLCVCRHCCEWSHKSC 136
           RC  N  C   H C+ SHK C
Sbjct: 419 RCETNADCPSSHSCQGSHKVC 439


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,191,869
Number of Sequences: 27780
Number of extensions: 216482
Number of successful extensions: 681
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 644
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 680
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)