Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_I21
         (285 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor Mc...    25   2.8  
SPBC31F10.07 |||cortical component Lsb5 |Schizosaccharomyces pom...    24   4.9  
SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe...    23   8.5  

>SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor
           Mcl1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 815

 Score = 24.6 bits (51), Expect = 2.8
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -1

Query: 216 NFMTTSSNCLFSFLFYITRTAELAKFV 136
           NF+  SS C     FY T+T EL KF+
Sbjct: 150 NFLAVSS-CNGILYFYDTQTRELIKFL 175


>SPBC31F10.07 |||cortical component Lsb5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 304

 Score = 23.8 bits (49), Expect = 4.9
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +2

Query: 137 TNLANSAVRVM*NKKENKQFDEVVIKFYL*C 229
           TNL+NS VR+  N  EN   ++ ++ +Y+ C
Sbjct: 177 TNLSNSLVRINPN-TENPAKNKQIMVYYVDC 206


>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 972

 Score = 23.0 bits (47), Expect = 8.5
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -3

Query: 280 TIFSNYLTFYLSNLVLKAL*IKLYDY 203
           +I  +Y+  ++S +  K L  KL+DY
Sbjct: 539 SILPSYIDLFISLMSFKNLNFKLFDY 564


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 905,984
Number of Sequences: 5004
Number of extensions: 13870
Number of successful extensions: 22
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 65671360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)