Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_I21
         (285 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    20   6.8  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    19   9.0  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    19   9.0  

>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 19.8 bits (39), Expect = 6.8
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -3

Query: 277 IFSNYLTFYLSNLVLKAL*IKLY 209
           IFS+ ++FYL   V+     K+Y
Sbjct: 208 IFSSTISFYLPLFVMVFTYYKIY 230


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 19.4 bits (38), Expect = 9.0
 Identities = 7/25 (28%), Positives = 16/25 (64%)
 Frame = -3

Query: 277 IFSNYLTFYLSNLVLKAL*IKLYDY 203
           + S+ ++FY+  +V+  +  +LY Y
Sbjct: 194 VVSSSISFYVPCIVMLGIYCRLYCY 218


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 19.4 bits (38), Expect = 9.0
 Identities = 6/8 (75%), Positives = 8/8 (100%)
 Frame = -2

Query: 206 LLHRIVYF 183
           L+HR+VYF
Sbjct: 338 LIHRLVYF 345


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 59,475
Number of Sequences: 438
Number of extensions: 1090
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  5619645
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)