Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_I20
         (464 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12G12.05c |taf9||transcription initiation factor Taf9|Schizo...    75   4e-15
SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr 2...    33   0.028
SPAC823.06 |taf3||transcription factor TFIID complex subunit Taf...    31   0.065
SPAC15A10.02 |taf12||transcription factor TFIID complex subunit ...    31   0.065
SPCC1020.12c ||SPCC14G10.06|xap-5-like protein|Schizosaccharomyc...    28   0.61 
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo...    27   1.4  
SPBC21B10.09 |||acetyl-CoA transporter |Schizosaccharomyces pomb...    27   1.9  
SPBC83.08 |||AAA family ATPase Rvb2 |Schizosaccharomyces pombe|c...    26   3.3  
SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces pombe...    25   4.3  
SPBC8D2.03c |hhf2|ams3, h4.2|histone H4 h4.2|Schizosaccharomyces...    25   5.7  
SPBC1105.12 |hhf3|h4.3|histone H4 h4.3|Schizosaccharomyces pombe...    25   5.7  
SPAC1834.03c |hhf1|h4.1|histone H4 h4.1|Schizosaccharomyces pomb...    25   5.7  
SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein Rrp12|Sch...    25   5.7  
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|...    25   7.5  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    24   9.9  
SPBC776.10c |cog6||Golgi transport complex peripheral subunit Co...    24   9.9  

>SPAC12G12.05c |taf9||transcription initiation factor
           Taf9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 163

 Score = 75.4 bits (177), Expect = 4e-15
 Identities = 35/83 (42%), Positives = 55/83 (66%), Gaps = 2/83 (2%)
 Frame = +3

Query: 141 PKDAQVIMSIMKEVGITDYEPRVINQLLEFTYRYVTCVLDDARVFANHAKKKT--IDLDD 314
           PKD ++I  I+  +G+  Y   V  QLL F +RY   ++ D++V+A H++ +   I ++D
Sbjct: 14  PKDVRLIHLILSSLGVPSYSQTVPLQLLTFAHRYTQQLIQDSQVYAEHSRGQNAPISVED 73

Query: 315 VRLAVQMQLDKSFTGPPPREVLV 383
           VRLAV  Q++ SFTGPPP+E L+
Sbjct: 74  VRLAVASQINHSFTGPPPKEFLL 96



 Score = 33.5 bits (73), Expect = 0.016
 Identities = 13/27 (48%), Positives = 19/27 (70%)
 Frame = +1

Query: 382 LEISKVKNLNPLPLIKPHCGLRLPPDR 462
           LE++  +N  PLP I+P  G RLPP++
Sbjct: 96  LELAMERNRKPLPQIQPSYGFRLPPEK 122


>SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 479

 Score = 32.7 bits (71), Expect = 0.028
 Identities = 16/44 (36%), Positives = 25/44 (56%)
 Frame = +3

Query: 207 VINQLLEFTYRYVTCVLDDARVFANHAKKKTIDLDDVRLAVQMQ 338
           VI +L   +  +   + +D   FA+HA +KTID  DV L ++ Q
Sbjct: 407 VIEELTTASELFFKQIANDLSAFADHAHRKTIDTQDVVLLMKRQ 450


>SPAC823.06 |taf3||transcription factor TFIID complex subunit
           Taf3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 155

 Score = 31.5 bits (68), Expect = 0.065
 Identities = 14/54 (25%), Positives = 28/54 (51%)
 Frame = +3

Query: 171 MKEVGITDYEPRVINQLLEFTYRYVTCVLDDARVFANHAKKKTIDLDDVRLAVQ 332
           ++  GI   +  ++N   + T RY+  + + A   A   ++   DL D+RLA++
Sbjct: 22  LRAAGIDRTKVSLLNSFTDITIRYIRLLSETAMAKAEVGRRSCCDLGDLRLAME 75


>SPAC15A10.02 |taf12||transcription factor TFIID complex subunit A
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 450

 Score = 31.5 bits (68), Expect = 0.065
 Identities = 17/45 (37%), Positives = 24/45 (53%)
 Frame = +3

Query: 198 EPRVINQLLEFTYRYVTCVLDDARVFANHAKKKTIDLDDVRLAVQ 332
           EP V   LLE    +V  V + A   A H K  T+D+ DV+L ++
Sbjct: 362 EPEVEELLLEIADEFVESVTNFACRLAKHRKSDTLDVRDVQLHLE 406


>SPCC1020.12c ||SPCC14G10.06|xap-5-like protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 288

 Score = 28.3 bits (60), Expect = 0.61
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -1

Query: 197 VVRDPYFLHNRHNNLCIFWNVF 132
           +V+  Y+L NRH   C+ W VF
Sbjct: 243 LVQKSYYLQNRHVFPCVHWEVF 264


>SPAC343.11c |msc1||multi-copy suppressor of Chk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1588

 Score = 27.1 bits (57), Expect = 1.4
 Identities = 11/22 (50%), Positives = 17/22 (77%)
 Frame = +1

Query: 343 INRSRDLLREKCWLEISKVKNL 408
           + ++ DLL+ K WL++SK KNL
Sbjct: 218 LGKAVDLLQIKQWLQLSKQKNL 239


>SPBC21B10.09 |||acetyl-CoA transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 519

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 13/28 (46%), Positives = 14/28 (50%)
 Frame = -2

Query: 172 IIDIITCASFGMCFVWVVPFDLSFSDIL 89
           I+D   C SFG    WVVP  L  S  L
Sbjct: 105 IVDTYYCRSFGRRKTWVVPCMLLISSTL 132


>SPBC83.08 |||AAA family ATPase Rvb2 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 465

 Score = 25.8 bits (54), Expect = 3.3
 Identities = 17/72 (23%), Positives = 33/72 (45%), Gaps = 4/72 (5%)
 Frame = +3

Query: 144 KDAQVIMSIMKEVGITDYEPRVINQLL----EFTYRYVTCVLDDARVFANHAKKKTIDLD 311
           ++ + I+ I  +    D EP  ++ L     E + RY   ++  +   A   K  TI+  
Sbjct: 359 EEVKEILKIRCQEEDVDMEPSALDYLSTIGQETSLRYALLLISSSNQVALKRKSATIEES 418

Query: 312 DVRLAVQMQLDK 347
           D+R   ++ LD+
Sbjct: 419 DIRRVYELFLDQ 430


>SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 969

 Score = 25.4 bits (53), Expect = 4.3
 Identities = 14/33 (42%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
 Frame = +3

Query: 138 IPKDAQVIM--SIMKEVGITDYEPRVINQLLEF 230
           I +DA +I+  + + E G+TDY+ RVI  L E+
Sbjct: 326 ITEDADIIVVSTFLTEEGLTDYQ-RVIKILFEY 357


>SPBC8D2.03c |hhf2|ams3, h4.2|histone H4 h4.2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 103

 Score = 25.0 bits (52), Expect = 5.7
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +3

Query: 252 VLDDARVFANHAKKKTIDLDDVRLAVQMQ 338
           V+ DA  +  HAK+KT+   DV  +++ Q
Sbjct: 66  VIRDAVTYTEHAKRKTVTSLDVVYSLKRQ 94


>SPBC1105.12 |hhf3|h4.3|histone H4 h4.3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 103

 Score = 25.0 bits (52), Expect = 5.7
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +3

Query: 252 VLDDARVFANHAKKKTIDLDDVRLAVQMQ 338
           V+ DA  +  HAK+KT+   DV  +++ Q
Sbjct: 66  VIRDAVTYTEHAKRKTVTSLDVVYSLKRQ 94


>SPAC1834.03c |hhf1|h4.1|histone H4 h4.1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 103

 Score = 25.0 bits (52), Expect = 5.7
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +3

Query: 252 VLDDARVFANHAKKKTIDLDDVRLAVQMQ 338
           V+ DA  +  HAK+KT+   DV  +++ Q
Sbjct: 66  VIRDAVTYTEHAKRKTVTSLDVVYSLKRQ 94


>SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein
           Rrp12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1001

 Score = 25.0 bits (52), Expect = 5.7
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -1

Query: 293 LLRVVSKYPCIVQHTSHITIRKFQELVYNSR 201
           LL + +K  CI  + +  T++K    +YN R
Sbjct: 499 LLPLYTKAGCITNNLNENTLKKLASAIYNDR 529


>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 446

 Score = 24.6 bits (51), Expect = 7.5
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +3

Query: 186 ITDYEPRVINQLLEFTY 236
           + D EPRV+N +L  TY
Sbjct: 66  LIDLEPRVVNNILSDTY 82


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 24.2 bits (50), Expect = 9.9
 Identities = 12/47 (25%), Positives = 21/47 (44%)
 Frame = -1

Query: 185  PYFLHNRHNNLCIFWNVFRLGGSXXXXXXXXFVLIINDVSTHAYIQY 45
            PY++ N    L  FW V  +  S         +L  +D+  H+ ++Y
Sbjct: 2363 PYYIKNESGVLLKFWQVNPIDAS--EGKNNTALLKYHDIPPHSEVKY 2407


>SPBC776.10c |cog6||Golgi transport complex peripheral subunit Cog6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 675

 Score = 24.2 bits (50), Expect = 9.9
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +3

Query: 204 RVINQLLEFTYRYVTCVLDD 263
           R+I  L +FTY+ +  VLDD
Sbjct: 404 RIIKTLEDFTYQRMKTVLDD 423


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,866,240
Number of Sequences: 5004
Number of extensions: 36369
Number of successful extensions: 98
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 176367270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)