Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_I20
         (464 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1248 - 25165929-25166891,25169159-25169473                       64   5e-11
05_05_0149 - 22733703-22736216                                         30   0.80 
03_06_0266 + 32746379-32746836,32747898-32748273,32748367-327486...    27   5.6  
08_01_0948 - 9405356-9406042,9406214-9406303,9406533-9406644,940...    27   7.4  

>07_03_1248 - 25165929-25166891,25169159-25169473
          Length = 425

 Score = 64.1 bits (149), Expect = 5e-11
 Identities = 31/83 (37%), Positives = 52/83 (62%), Gaps = 2/83 (2%)
 Frame = +3

Query: 141 PKDAQVIMSIMKEVGIT--DYEPRVINQLLEFTYRYVTCVLDDARVFANHAKKKTIDLDD 314
           P+D +V+  I+  +G+   DYE   +++LL F +RY   VL +A+ +A HA ++++  DD
Sbjct: 27  PRDLRVVREILHSLGLREGDYEEAAVHKLLLFAHRYAGDVLGEAKAYAGHAGRESLQADD 86

Query: 315 VRLAVQMQLDKSFTGPPPREVLV 383
           VRLA+Q +   S   PP RE ++
Sbjct: 87  VRLAIQAR-GMSSAAPPSREEML 108


>05_05_0149 - 22733703-22736216
          Length = 837

 Score = 30.3 bits (65), Expect = 0.80
 Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
 Frame = +3

Query: 129 TKHIPKDAQVIMSIMKEVGITDYEPRVINQLLEFTYRYVTCVLDDARVFANHAKKKTID- 305
           T++I K+     S + E     +EP   N     + +  +C  +D+ V + +AKK+T D 
Sbjct: 394 TQNIHKEMNAACSELAEFVEKLHEPEPQNSGFMNSSQESSCQEEDSEVTSQYAKKQTSDS 453

Query: 306 LDDVRLAVQMQLDKSFTGP 362
           +D  +  V+ Q DK   GP
Sbjct: 454 IDGSKNEVEKQ-DKGSEGP 471


>03_06_0266 +
           32746379-32746836,32747898-32748273,32748367-32748640,
           32750605-32750789
          Length = 430

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +3

Query: 171 MKEVGITDYEPRVINQLLEFTYR 239
           +KE+ I D EP+V   +L F YR
Sbjct: 264 IKEIVIDDMEPKVFKAVLHFMYR 286


>08_01_0948 -
           9405356-9406042,9406214-9406303,9406533-9406644,
           9407065-9407162,9407494-9407697,9407796-9408285,
           9409711-9409715
          Length = 561

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
 Frame = -2

Query: 187 IPTSFIIDIITCASFGMCFVWVVPFDLSFSDI---LF*LSMMFPLMRIYNIVVYFKMIM 20
           I T+F ID++         VW+    +SF  I    F + ++   +R+Y +++    IM
Sbjct: 149 IRTNFFIDLVAALPVPQVLVWIAMPSISFKHINAPFFLIILVQSAIRLYIVILLSLSIM 207


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,777,684
Number of Sequences: 37544
Number of extensions: 218957
Number of successful extensions: 521
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 512
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 521
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 931320312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)