Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_I20
(464 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U06458-1|AAC47347.1| 278|Drosophila melanogaster transcription ... 152 2e-37
L29540-1|AAA28488.1| 278|Drosophila melanogaster TAFII40 protein. 152 2e-37
AY061338-1|AAL28886.2| 274|Drosophila melanogaster LD26511p pro... 152 2e-37
AE014298-2613|AAF48767.3| 278|Drosophila melanogaster CG6474-PA... 152 2e-37
U06459-1|AAC46480.1| 592|Drosophila melanogaster transcription ... 30 1.8
L25443-1|AAA16536.1| 592|Drosophila melanogaster TAFII60 protein. 30 1.8
AY051702-1|AAK93126.1| 606|Drosophila melanogaster LD24529p pro... 30 1.8
AE014296-3177|AAF49139.2| 606|Drosophila melanogaster CG32211-P... 30 1.8
BT010312-1|AAQ23630.1| 1482|Drosophila melanogaster AT29286p pro... 29 3.1
AY119466-1|AAM50120.1| 1132|Drosophila melanogaster GH03957p pro... 29 3.1
AE013599-2418|AAS64828.1| 1402|Drosophila melanogaster CG30460-P... 29 3.1
AE013599-2417|AAS64827.1| 1520|Drosophila melanogaster CG30460-P... 29 3.1
AE013599-2416|AAS64826.1| 1132|Drosophila melanogaster CG30460-P... 29 3.1
AE013599-2415|AAF57906.3| 1868|Drosophila melanogaster CG30460-P... 29 3.1
AY118358-1|AAM48387.1| 984|Drosophila melanogaster RE04357p pro... 29 4.1
AY118555-1|AAM49924.1| 743|Drosophila melanogaster LD35784p pro... 28 7.1
AY075467-1|AAL68279.1| 725|Drosophila melanogaster RE26721p pro... 28 7.1
AF279146-1|AAF99080.1| 743|Drosophila melanogaster replication ... 28 7.1
AE014297-2875|AAF55813.2| 725|Drosophila melanogaster CG15695-P... 28 7.1
AE013599-2051|AAF58141.2| 743|Drosophila melanogaster CG8171-PA... 28 7.1
>U06458-1|AAC47347.1| 278|Drosophila melanogaster transcription
initiation factorTFIID 42 kDa subunit protein.
Length = 278
Score = 152 bits (369), Expect = 2e-37
Identities = 67/96 (69%), Positives = 84/96 (87%)
Frame = +3
Query: 99 EKDKSKGTTQTKHIPKDAQVIMSIMKEVGITDYEPRVINQLLEFTYRYVTCVLDDARVFA 278
+ DK+K + Q KH+PKDAQVIMSI+KE+ + +YEPRV+NQLLEFT+RYVTC+LDDA+V+A
Sbjct: 5 KSDKAKISAQIKHVPKDAQVIMSILKELNVQEYEPRVVNQLLEFTFRYVTCILDDAKVYA 64
Query: 279 NHAKKKTIDLDDVRLAVQMQLDKSFTGPPPREVLVR 386
NHA+KKTIDLDDVRLA ++ LDKSFTGP R VL +
Sbjct: 65 NHARKKTIDLDDVRLATEVTLDKSFTGPLERHVLAK 100
Score = 46.0 bits (104), Expect = 3e-05
Identities = 18/26 (69%), Positives = 22/26 (84%)
Frame = +1
Query: 385 EISKVKNLNPLPLIKPHCGLRLPPDR 462
+++ V+N PLP IKPHCGLRLPPDR
Sbjct: 100 KVADVRNSMPLPPIKPHCGLRLPPDR 125
>L29540-1|AAA28488.1| 278|Drosophila melanogaster TAFII40 protein.
Length = 278
Score = 152 bits (369), Expect = 2e-37
Identities = 67/96 (69%), Positives = 84/96 (87%)
Frame = +3
Query: 99 EKDKSKGTTQTKHIPKDAQVIMSIMKEVGITDYEPRVINQLLEFTYRYVTCVLDDARVFA 278
+ DK+K + Q KH+PKDAQVIMSI+KE+ + +YEPRV+NQLLEFT+RYVTC+LDDA+V+A
Sbjct: 5 KSDKAKISAQIKHVPKDAQVIMSILKELNVQEYEPRVVNQLLEFTFRYVTCILDDAKVYA 64
Query: 279 NHAKKKTIDLDDVRLAVQMQLDKSFTGPPPREVLVR 386
NHA+KKTIDLDDVRLA ++ LDKSFTGP R VL +
Sbjct: 65 NHARKKTIDLDDVRLATEVTLDKSFTGPLERHVLAK 100
Score = 46.0 bits (104), Expect = 3e-05
Identities = 18/26 (69%), Positives = 22/26 (84%)
Frame = +1
Query: 385 EISKVKNLNPLPLIKPHCGLRLPPDR 462
+++ V+N PLP IKPHCGLRLPPDR
Sbjct: 100 KVADVRNSMPLPPIKPHCGLRLPPDR 125
>AY061338-1|AAL28886.2| 274|Drosophila melanogaster LD26511p
protein.
Length = 274
Score = 152 bits (369), Expect = 2e-37
Identities = 67/96 (69%), Positives = 84/96 (87%)
Frame = +3
Query: 99 EKDKSKGTTQTKHIPKDAQVIMSIMKEVGITDYEPRVINQLLEFTYRYVTCVLDDARVFA 278
+ DK+K + Q KH+PKDAQVIMSI+KE+ + +YEPRV+NQLLEFT+RYVTC+LDDA+V+A
Sbjct: 1 KSDKAKISAQIKHVPKDAQVIMSILKELNVQEYEPRVVNQLLEFTFRYVTCILDDAKVYA 60
Query: 279 NHAKKKTIDLDDVRLAVQMQLDKSFTGPPPREVLVR 386
NHA+KKTIDLDDVRLA ++ LDKSFTGP R VL +
Sbjct: 61 NHARKKTIDLDDVRLATEVTLDKSFTGPLERHVLAK 96
Score = 46.0 bits (104), Expect = 3e-05
Identities = 18/26 (69%), Positives = 22/26 (84%)
Frame = +1
Query: 385 EISKVKNLNPLPLIKPHCGLRLPPDR 462
+++ V+N PLP IKPHCGLRLPPDR
Sbjct: 96 KVADVRNSMPLPPIKPHCGLRLPPDR 121
>AE014298-2613|AAF48767.3| 278|Drosophila melanogaster CG6474-PA
protein.
Length = 278
Score = 152 bits (369), Expect = 2e-37
Identities = 67/96 (69%), Positives = 84/96 (87%)
Frame = +3
Query: 99 EKDKSKGTTQTKHIPKDAQVIMSIMKEVGITDYEPRVINQLLEFTYRYVTCVLDDARVFA 278
+ DK+K + Q KH+PKDAQVIMSI+KE+ + +YEPRV+NQLLEFT+RYVTC+LDDA+V+A
Sbjct: 5 KSDKAKISAQIKHVPKDAQVIMSILKELNVQEYEPRVVNQLLEFTFRYVTCILDDAKVYA 64
Query: 279 NHAKKKTIDLDDVRLAVQMQLDKSFTGPPPREVLVR 386
NHA+KKTIDLDDVRLA ++ LDKSFTGP R VL +
Sbjct: 65 NHARKKTIDLDDVRLATEVTLDKSFTGPLERHVLAK 100
Score = 46.0 bits (104), Expect = 3e-05
Identities = 18/26 (69%), Positives = 22/26 (84%)
Frame = +1
Query: 385 EISKVKNLNPLPLIKPHCGLRLPPDR 462
+++ V+N PLP IKPHCGLRLPPDR
Sbjct: 100 KVADVRNSMPLPPIKPHCGLRLPPDR 125
>U06459-1|AAC46480.1| 592|Drosophila melanogaster transcription
initiation factorTFIID 62 kDa subunit protein.
Length = 592
Score = 29.9 bits (64), Expect = 1.8
Identities = 13/63 (20%), Positives = 33/63 (52%)
Frame = +3
Query: 150 AQVIMSIMKEVGITDYEPRVINQLLEFTYRYVTCVLDDARVFANHAKKKTIDLDDVRLAV 329
A+ + I + +G+ +L E + ++ DA F NHAK++ + + D+ +++
Sbjct: 9 AESMKVIAESIGVGSLSDDAAKELAEDVSIKLKRIVQDAAKFMNHAKRQKLSVRDIDMSL 68
Query: 330 QMQ 338
+++
Sbjct: 69 KVR 71
>L25443-1|AAA16536.1| 592|Drosophila melanogaster TAFII60 protein.
Length = 592
Score = 29.9 bits (64), Expect = 1.8
Identities = 13/63 (20%), Positives = 33/63 (52%)
Frame = +3
Query: 150 AQVIMSIMKEVGITDYEPRVINQLLEFTYRYVTCVLDDARVFANHAKKKTIDLDDVRLAV 329
A+ + I + +G+ +L E + ++ DA F NHAK++ + + D+ +++
Sbjct: 9 AESMKVIAESIGVGSLSDDAAKELAEDVSIKLKRIVQDAAKFMNHAKRQKLSVRDIDMSL 68
Query: 330 QMQ 338
+++
Sbjct: 69 KVR 71
>AY051702-1|AAK93126.1| 606|Drosophila melanogaster LD24529p
protein.
Length = 606
Score = 29.9 bits (64), Expect = 1.8
Identities = 13/63 (20%), Positives = 33/63 (52%)
Frame = +3
Query: 150 AQVIMSIMKEVGITDYEPRVINQLLEFTYRYVTCVLDDARVFANHAKKKTIDLDDVRLAV 329
A+ + I + +G+ +L E + ++ DA F NHAK++ + + D+ +++
Sbjct: 23 AESMKVIAESIGVGSLSDDAAKELAEDVSIKLKRIVQDAAKFMNHAKRQKLSVRDIDMSL 82
Query: 330 QMQ 338
+++
Sbjct: 83 KVR 85
>AE014296-3177|AAF49139.2| 606|Drosophila melanogaster CG32211-PA
protein.
Length = 606
Score = 29.9 bits (64), Expect = 1.8
Identities = 13/63 (20%), Positives = 33/63 (52%)
Frame = +3
Query: 150 AQVIMSIMKEVGITDYEPRVINQLLEFTYRYVTCVLDDARVFANHAKKKTIDLDDVRLAV 329
A+ + I + +G+ +L E + ++ DA F NHAK++ + + D+ +++
Sbjct: 23 AESMKVIAESIGVGSLSDDAAKELAEDVSIKLKRIVQDAAKFMNHAKRQKLSVRDIDMSL 82
Query: 330 QMQ 338
+++
Sbjct: 83 KVR 85
>BT010312-1|AAQ23630.1| 1482|Drosophila melanogaster AT29286p protein.
Length = 1482
Score = 29.1 bits (62), Expect = 3.1
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +1
Query: 346 NRSRDLLREKCWLEISKVKNLNPLPLIKP 432
NRS E+CW + K NPLPL+ P
Sbjct: 920 NRSSMEYDEQCWQQQQKQLLANPLPLVMP 948
>AY119466-1|AAM50120.1| 1132|Drosophila melanogaster GH03957p
protein.
Length = 1132
Score = 29.1 bits (62), Expect = 3.1
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +1
Query: 346 NRSRDLLREKCWLEISKVKNLNPLPLIKP 432
NRS E+CW + K NPLPL+ P
Sbjct: 570 NRSSMEYDEQCWQQQQKQLLANPLPLVMP 598
>AE013599-2418|AAS64828.1| 1402|Drosophila melanogaster CG30460-PD,
isoform D protein.
Length = 1402
Score = 29.1 bits (62), Expect = 3.1
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +1
Query: 346 NRSRDLLREKCWLEISKVKNLNPLPLIKP 432
NRS E+CW + K NPLPL+ P
Sbjct: 840 NRSSMEYDEQCWQQQQKQLLANPLPLVMP 868
>AE013599-2417|AAS64827.1| 1520|Drosophila melanogaster CG30460-PA,
isoform A protein.
Length = 1520
Score = 29.1 bits (62), Expect = 3.1
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +1
Query: 346 NRSRDLLREKCWLEISKVKNLNPLPLIKP 432
NRS E+CW + K NPLPL+ P
Sbjct: 958 NRSSMEYDEQCWQQQQKQLLANPLPLVMP 986
>AE013599-2416|AAS64826.1| 1132|Drosophila melanogaster CG30460-PB,
isoform B protein.
Length = 1132
Score = 29.1 bits (62), Expect = 3.1
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +1
Query: 346 NRSRDLLREKCWLEISKVKNLNPLPLIKP 432
NRS E+CW + K NPLPL+ P
Sbjct: 570 NRSSMEYDEQCWQQQQKQLLANPLPLVMP 598
>AE013599-2415|AAF57906.3| 1868|Drosophila melanogaster CG30460-PC,
isoform C protein.
Length = 1868
Score = 29.1 bits (62), Expect = 3.1
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +1
Query: 346 NRSRDLLREKCWLEISKVKNLNPLPLIKP 432
NRS E+CW + K NPLPL+ P
Sbjct: 1306 NRSSMEYDEQCWQQQQKQLLANPLPLVMP 1334
>AY118358-1|AAM48387.1| 984|Drosophila melanogaster RE04357p
protein.
Length = 984
Score = 28.7 bits (61), Expect = 4.1
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = +1
Query: 361 LLREKCWLEISKVKNLNPLPLIKPHCGLRL 450
LL+E W ISK KNL PL IK + G ++
Sbjct: 331 LLKE--WANISKWKNLQPLDQIKDYFGAKV 358
>AY118555-1|AAM49924.1| 743|Drosophila melanogaster LD35784p
protein.
Length = 743
Score = 27.9 bits (59), Expect = 7.1
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Frame = +3
Query: 222 LEFTYRYVTCVLD--DARVFANHAKKKTIDLDDVRLAVQMQLDKSFT 356
L + YR++ V D+ V H +K+TI ++ AVQ L K+FT
Sbjct: 318 LPYKYRHLLDVFKGLDSVVAMFHNRKETITFKKLKPAVQRMLRKNFT 364
>AY075467-1|AAL68279.1| 725|Drosophila melanogaster RE26721p
protein.
Length = 725
Score = 27.9 bits (59), Expect = 7.1
Identities = 14/49 (28%), Positives = 23/49 (46%)
Frame = -1
Query: 263 IVQHTSHITIRKFQELVYNSRLVVRDPYFLHNRHNNLCIFWNVFRLGGS 117
I + S+I K ++++ + V Y LH N+ C F + R G S
Sbjct: 178 IYKKHSYIVCDKSRDMITVNYNVTDSTYRLHKNENSTCCFKQILRAGTS 226
>AF279146-1|AAF99080.1| 743|Drosophila melanogaster replication
protein double parked protein.
Length = 743
Score = 27.9 bits (59), Expect = 7.1
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Frame = +3
Query: 222 LEFTYRYVTCVLD--DARVFANHAKKKTIDLDDVRLAVQMQLDKSFT 356
L + YR++ V D+ V H +K+TI ++ AVQ L K+FT
Sbjct: 318 LPYKYRHLLDVFKGLDSVVAMFHNRKETITFKKLKPAVQRMLRKNFT 364
>AE014297-2875|AAF55813.2| 725|Drosophila melanogaster CG15695-PA
protein.
Length = 725
Score = 27.9 bits (59), Expect = 7.1
Identities = 14/49 (28%), Positives = 23/49 (46%)
Frame = -1
Query: 263 IVQHTSHITIRKFQELVYNSRLVVRDPYFLHNRHNNLCIFWNVFRLGGS 117
I + S+I K ++++ + V Y LH N+ C F + R G S
Sbjct: 178 IYKKHSYIVCDKSRDMITVNYNVTDSTYRLHKNENSTCCFKQILRAGTS 226
>AE013599-2051|AAF58141.2| 743|Drosophila melanogaster CG8171-PA
protein.
Length = 743
Score = 27.9 bits (59), Expect = 7.1
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Frame = +3
Query: 222 LEFTYRYVTCVLD--DARVFANHAKKKTIDLDDVRLAVQMQLDKSFT 356
L + YR++ V D+ V H +K+TI ++ AVQ L K+FT
Sbjct: 318 LPYKYRHLLDVFKGLDSVVAMFHNRKETITFKKLKPAVQRMLRKNFT 364
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,937,852
Number of Sequences: 53049
Number of extensions: 386396
Number of successful extensions: 990
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 962
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 990
length of database: 24,988,368
effective HSP length: 79
effective length of database: 20,797,497
effective search space used: 1559812275
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -