Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_I20
         (464 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X91509-1|CAA62809.1|  103|Apis mellifera histone H4 protein.           26   0.17 
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    24   0.70 
AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     23   1.2  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    21   6.5  

>X91509-1|CAA62809.1|  103|Apis mellifera histone H4 protein.
          Length = 103

 Score = 26.2 bits (55), Expect = 0.17
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +3

Query: 252 VLDDARVFANHAKKKTIDLDDVRLAVQMQ 338
           V+ DA  +  H K+KT+   DV  A+++Q
Sbjct: 66  VIRDAVTYTEHTKRKTVTAMDVVYALKIQ 94


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 24.2 bits (50), Expect = 0.70
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +3

Query: 237 RYVTCVLDDARVFANHAKKK 296
           R +   +DDAR  A HAK K
Sbjct: 510 REIEKTIDDARFIAQHAKNK 529


>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 19/66 (28%), Positives = 27/66 (40%), Gaps = 1/66 (1%)
 Frame = +2

Query: 2   HEDLVTHNHFEVNHNIVYTHEWKHH**LKQNVRKR*IKRNHPNETHSKRCTSY-YVDYEG 178
           HE+L     FEV+       EWK +  L+ +V K  I      +T      +Y Y  Y G
Sbjct: 73  HEELRRTEAFEVDLEFYLGKEWKKNLNLRDSVTKYLIHLKEIEDTEPILLIAYIYHLYMG 132

Query: 179 SRDHGL 196
               G+
Sbjct: 133 LLSGGI 138


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 21.0 bits (42), Expect = 6.5
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -1

Query: 53  IQYCGLLQNDYE*LN 9
           +QY GLL+N  E LN
Sbjct: 422 LQYAGLLRNRSEYLN 436


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 128,565
Number of Sequences: 438
Number of extensions: 2444
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12436029
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)