Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_I19
(212 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo... 27 0.34
SPBC1861.05 |||carbohydrate kinase|Schizosaccharomyces pombe|chr... 27 0.45
SPAC29B12.12 |||helper of TIM |Schizosaccharomyces pombe|chr 1||... 26 0.59
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 24 2.4
SPCC306.11 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 24 3.1
SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit ... 24 3.1
SPAC25B8.05 |||pseudouridylate synthase |Schizosaccharomyces pom... 23 4.2
SPBC4B4.11 |||conserved fungal protein|Schizosaccharomyces pombe... 23 4.2
SPCC1450.16c |||triacylglycerol lipase|Schizosaccharomyces pombe... 23 5.5
SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyce... 23 7.3
SPAC57A10.12c |ura3||dihydroorotate dehydrogenase Ura3|Schizosac... 22 9.6
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch... 22 9.6
>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
Ino80|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1604
Score = 27.1 bits (57), Expect = 0.34
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = +1
Query: 37 VLQEFGTRRVLTLISSVYIARIKAPPSPGTRNIYC 141
VL+E ++ LTL+ SV + R APP +IYC
Sbjct: 1322 VLEESDSQLDLTLLDSVLVQRASAPPI----DIYC 1352
>SPBC1861.05 |||carbohydrate kinase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 747
Score = 26.6 bits (56), Expect = 0.45
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +1
Query: 97 RIKAPPSPGTRNIYCQARHRAAMS 168
R+K P+PG RNI C+ A+S
Sbjct: 21 RLKRNPNPGLRNILCRRYSPLALS 44
>SPAC29B12.12 |||helper of TIM |Schizosaccharomyces pombe|chr
1|||Manual
Length = 113
Score = 26.2 bits (55), Expect = 0.59
Identities = 11/27 (40%), Positives = 19/27 (70%), Gaps = 2/27 (7%)
Frame = -2
Query: 157 HGALLDS--RCFEYPAKVALLSLQCTQ 83
+G L+D+ RCF Y +K +++L+C Q
Sbjct: 13 YGKLVDNETRCFHYHSKADVVALRCGQ 39
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 24.2 bits (50), Expect = 2.4
Identities = 8/13 (61%), Positives = 12/13 (92%)
Frame = -2
Query: 124 YPAKVALLSLQCT 86
YP+++ LLSL+CT
Sbjct: 1742 YPSQITLLSLRCT 1754
>SPCC306.11 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 283
Score = 23.8 bits (49), Expect = 3.1
Identities = 14/49 (28%), Positives = 20/49 (40%)
Frame = +3
Query: 12 SLELCGSPGAAGIRHEARSYVNLICVHCKDKSATFAGYSKHLLSSKAPC 158
S++LCG PGA + S D S+ A S + +S C
Sbjct: 23 SIKLCGIPGAPACKRREISLYKRATDTFPDLSSAIASTSYYNISEGTYC 71
>SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit
Rpt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 438
Score = 23.8 bits (49), Expect = 3.1
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = -1
Query: 101 ILAMYTDEINVRTRLVPN 48
ILA DE+N RTRL+ N
Sbjct: 31 ILAAGIDELNSRTRLLEN 48
>SPAC25B8.05 |||pseudouridylate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 450
Score = 23.4 bits (48), Expect = 4.2
Identities = 11/25 (44%), Positives = 13/25 (52%), Gaps = 1/25 (4%)
Frame = +3
Query: 93 CK-DKSATFAGYSKHLLSSKAPCCD 164
CK D S Y + +LSSK C D
Sbjct: 243 CKIDASKQITNYHRRILSSKVICID 267
>SPBC4B4.11 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 113
Score = 23.4 bits (48), Expect = 4.2
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -3
Query: 189 LVPPSNCTHRSTVPCLTVDVSST 121
+ P SNC + STVP +S+T
Sbjct: 14 IFPFSNCRYASTVPSPRSGISNT 36
>SPCC1450.16c |||triacylglycerol lipase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 513
Score = 23.0 bits (47), Expect = 5.5
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = -3
Query: 141 TVDVSSTRRRWRFYPCN 91
T+D +S R +WRF P +
Sbjct: 66 TIDKASGRWKWRFTPAS 82
>SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 506
Score = 22.6 bits (46), Expect = 7.3
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +3
Query: 90 HCKDKSAT 113
HCKDKSAT
Sbjct: 448 HCKDKSAT 455
>SPAC57A10.12c |ura3||dihydroorotate dehydrogenase
Ura3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 443
Score = 22.2 bits (45), Expect = 9.6
Identities = 9/39 (23%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +1
Query: 79 SSVYIARIKAPPSPGTRNIYCQARHRAAMSA-VARRHKV 192
+ + + + +P +PG RN+ ++ ++A V+ R+K+
Sbjct: 258 ADILVINVSSPNTPGLRNLQKKSALSTLLTAVVSERNKL 296
>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1374
Score = 22.2 bits (45), Expect = 9.6
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = -2
Query: 124 YPAKVALLSLQCTQMRLT*ERASCRIPAAPGDPHSS 17
+ A+ L C ++ L +C++PAA G P S
Sbjct: 560 FTAQPCLSGWYCFEVELP---KACKVPAAQGSPAKS 592
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 904,680
Number of Sequences: 5004
Number of extensions: 14393
Number of successful extensions: 32
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32
length of database: 2,362,478
effective HSP length: 50
effective length of database: 2,112,278
effective search space used: 42245560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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