Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_I19
         (212 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_1124 + 26301884-26303725                                         28   0.89 
08_02_0740 + 20593389-20593521,20593654-20593783,20593888-20594554     27   1.6  
08_01_0420 + 3726392-3727116,3727450-3727648,3727787-3727879,372...    26   3.6  
02_05_1000 + 33417357-33417600,33417692-33417744,33418376-334184...    26   3.6  
04_01_0333 - 4391571-4392289,4393048-4393159                           26   4.8  
02_02_0637 - 12491706-12492575,12492580-12492657                       26   4.8  
10_01_0016 + 190329-191210,206896-207033,208029-208103,208533-20...    25   6.3  
07_01_0985 - 8297560-8297610,8297728-8297939,8298327-8298449,829...    25   6.3  
02_02_0398 - 9777596-9778146,9778229-9778400,9778522-9778639,977...    25   6.3  
01_06_0801 - 32085110-32085274,32086318-32086365,32086441-320864...    25   6.3  
11_06_0156 + 20748472-20748951                                         25   8.3  
05_02_0034 + 5856165-5856183,5858845-5859173,5859275-5859277,585...    25   8.3  
01_07_0021 - 40533864-40534583,40534779-40534814,40534909-405350...    25   8.3  

>12_02_1124 + 26301884-26303725
          Length = 613

 Score = 28.3 bits (60), Expect = 0.89
 Identities = 18/43 (41%), Positives = 24/43 (55%)
 Frame = +1

Query: 55  TRRVLTLISSVYIARIKAPPSPGTRNIYCQARHRAAMSAVARR 183
           T  VL+  SSV  A +  PP P T+ ++ +A   AA  A ARR
Sbjct: 42  TNSVLSAPSSVPPAYVPPPPPPPTK-MFPEAGDAAAAKAAARR 83


>08_02_0740 + 20593389-20593521,20593654-20593783,20593888-20594554
          Length = 309

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = +1

Query: 100 IKAPPSPGTRNIYCQARHRAAMSAVARRHK 189
           ++ PPSP     + + ++ AA +AVA +H+
Sbjct: 129 LQPPPSPSPEKKHAERKNTAAAAAVAEQHQ 158


>08_01_0420 +
           3726392-3727116,3727450-3727648,3727787-3727879,
           3728001-3728129,3728445-3728498,3728597-3728674,
           3728773-3728835,3729101-3729213,3729392-3729500
          Length = 520

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +1

Query: 106 APPSPGTRNIYCQARHRAAMSAVARRHKVQLLR 204
           APP+P T  +   A HR  +S   R   ++ LR
Sbjct: 54  APPAPATPKLTAVAAHRLKLSPHGRAQVMRALR 86


>02_05_1000 +
           33417357-33417600,33417692-33417744,33418376-33418413,
           33418720-33419114,33420092-33420221,33420512-33421343
          Length = 563

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +3

Query: 126 SKHLLSSKAPCCDECS 173
           SK L+  +APCCD+ S
Sbjct: 194 SKELVMGRAPCCDKAS 209


>04_01_0333 - 4391571-4392289,4393048-4393159
          Length = 276

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 14/32 (43%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
 Frame = -1

Query: 122 PGEGGA-FILAMYTDEINVRTRLVPNSCSTGG 30
           PG GG  F      D  NV  RL P+S   GG
Sbjct: 145 PGSGGQDFYDVSLVDGFNVPVRLAPSSSGGGG 176


>02_02_0637 - 12491706-12492575,12492580-12492657
          Length = 315

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +3

Query: 27  GSPGAAGIRHEARSYVNLICVHCK 98
           G+ GAAGI+ + ++Y   I  +CK
Sbjct: 171 GARGAAGIKPDLKAYNAAIAAYCK 194


>10_01_0016 +
           190329-191210,206896-207033,208029-208103,208533-208639,
           209193-209250,210183-210242,210320-210394,210504-210641,
           211766-211820,212134-212256,212645-212883
          Length = 649

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +3

Query: 3   WRPSLELCGSPGAAGIRHEARSYVNLI 83
           W P LE   +  +AG+  E   Y+NLI
Sbjct: 362 WAPMLEKISNINSAGVDWERSFYLNLI 388


>07_01_0985 -
           8297560-8297610,8297728-8297939,8298327-8298449,
           8298763-8298817,8299940-8300077,8300187-8300261,
           8300339-8300398,8301335-8301392,8301948-8302054,
           8302484-8302558,8302643-8302838,8304222-8304301,
           8308887-8309757,8310672-8310679
          Length = 702

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +3

Query: 3   WRPSLELCGSPGAAGIRHEARSYVNLI 83
           W P LE   +  +AG+  E   Y+NLI
Sbjct: 407 WAPMLEKISNINSAGVDWERSFYLNLI 433


>02_02_0398 -
           9777596-9778146,9778229-9778400,9778522-9778639,
           9778751-9779014,9779287-9779354,9779520-9780145,
           9780257-9780412,9780528-9780625,9780741-9780832,
           9780940-9781011
          Length = 738

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -3

Query: 174 NCTHRSTVPCLTVDVSSTRR 115
           N   R++VPC+ VD   TRR
Sbjct: 431 NACSRASVPCVLVDYEITRR 450


>01_06_0801 -
           32085110-32085274,32086318-32086365,32086441-32086483,
           32086588-32086651,32086740-32086792,32086899-32086937,
           32087031-32087113,32087200-32087280
          Length = 191

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 14/56 (25%), Positives = 23/56 (41%)
 Frame = +3

Query: 3   WRPSLELCGSPGAAGIRHEARSYVNLICVHCKDKSATFAGYSKHLLSSKAPCCDEC 170
           W+P+L    +    G R    S +  +C  CKD+      Y K+    +   C +C
Sbjct: 16  WKPNLGQKINETEPGGRFRPLSEITGVCQRCKDQIDWKRRYGKYKPIVEPAKCQKC 71


>11_06_0156 + 20748472-20748951
          Length = 159

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +2

Query: 14 SRTMWIPRCCRNSAR 58
          S T W+PR CR S R
Sbjct: 3  SFTCWLPRACRRSMR 17


>05_02_0034 +
           5856165-5856183,5858845-5859173,5859275-5859277,
           5859440-5859517,5859623-5860090,5860378-5860437,
           5860442-5860666,5860791-5860952,5861502-5861870,
           5861950-5863390,5863598-5863701,5863744-5863779,
           5863780-5863977,5864275-5864538
          Length = 1251

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = +3

Query: 99  DKSATFAGYSKHLLSSKAPCCDE 167
           D+      Y  HL +S  PCC E
Sbjct: 601 DRECALCYYDLHLSASGCPCCPE 623


>01_07_0021 -
           40533864-40534583,40534779-40534814,40534909-40535048,
           40535837-40535922,40536430-40536653,40536770-40536865,
           40538766-40538833,40539945-40540055,40540799-40540955
          Length = 545

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +1

Query: 40  LQEFGTRRVLTLISSVYIARIKAPPSP 120
           L+E  T +   L + VY++R ++PP P
Sbjct: 395 LEEHSTNKRQKLQNDVYVSRPQSPPPP 421


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,112,818
Number of Sequences: 37544
Number of extensions: 130790
Number of successful extensions: 349
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 348
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 348
length of database: 14,793,348
effective HSP length: 50
effective length of database: 12,916,148
effective search space used: 258322960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)