Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_I19
(212 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z82274-4|CAB05228.1| 429|Caenorhabditis elegans Hypothetical pr... 29 0.59
Z82274-3|CAB05229.1| 435|Caenorhabditis elegans Hypothetical pr... 29 0.59
U58760-8|AAY55858.2| 216|Caenorhabditis elegans Hypothetical pr... 27 2.4
Z77667-6|CAB01235.2| 870|Caenorhabditis elegans Hypothetical pr... 26 4.2
AF416567-1|AAL27004.1| 870|Caenorhabditis elegans nuclear zinc ... 26 4.2
AF045645-3|AAC02610.2| 193|Caenorhabditis elegans Hypothetical ... 25 5.5
U41532-7|ABD63237.1| 769|Caenorhabditis elegans Hypothetical pr... 25 7.3
U41532-6|AAF99908.2| 812|Caenorhabditis elegans Hypothetical pr... 25 7.3
U00041-1|AAA50671.3| 2248|Caenorhabditis elegans Abnormal cell l... 25 9.7
AF245435-1|AAF87497.1| 2248|Caenorhabditis elegans zinc finger p... 25 9.7
AF099925-12|AAC69509.1| 257|Caenorhabditis elegans Hypothetical... 25 9.7
>Z82274-4|CAB05228.1| 429|Caenorhabditis elegans Hypothetical
protein JC8.6b protein.
Length = 429
Score = 28.7 bits (61), Expect = 0.59
Identities = 14/37 (37%), Positives = 16/37 (43%)
Frame = +3
Query: 90 HCKDKSATFAGYSKHLLSSKAPCCDECSC*AAQGAVT 200
HCK KS Y + +K PC D C C Q T
Sbjct: 248 HCK-KSGCLKNYCE-CYEAKVPCTDRCKCKGCQNTET 282
>Z82274-3|CAB05229.1| 435|Caenorhabditis elegans Hypothetical
protein JC8.6a protein.
Length = 435
Score = 28.7 bits (61), Expect = 0.59
Identities = 14/37 (37%), Positives = 16/37 (43%)
Frame = +3
Query: 90 HCKDKSATFAGYSKHLLSSKAPCCDECSC*AAQGAVT 200
HCK KS Y + +K PC D C C Q T
Sbjct: 254 HCK-KSGCLKNYCE-CYEAKVPCTDRCKCKGCQNTET 288
>U58760-8|AAY55858.2| 216|Caenorhabditis elegans Hypothetical
protein C27A2.7 protein.
Length = 216
Score = 26.6 bits (56), Expect = 2.4
Identities = 20/66 (30%), Positives = 27/66 (40%), Gaps = 3/66 (4%)
Frame = -3
Query: 207 HTQ*LHLVPPSNCTHRSTVPCLTVDVSSTRRRWRFYPCNVHR*D---*RKNAPRAEFLQH 37
H Q +H P NCTH C + R R Y C HR D RKN ++ H
Sbjct: 153 HMQMMHKCPVENCTHPG-YKCTKALNAHVRTHTRPYAC--HRCDASFARKNDLQSHLSTH 209
Query: 36 RGIHIV 19
+ ++
Sbjct: 210 QATPVI 215
>Z77667-6|CAB01235.2| 870|Caenorhabditis elegans Hypothetical
protein M04B2.1 protein.
Length = 870
Score = 25.8 bits (54), Expect = 4.2
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +3
Query: 78 LICVHCKDKSATFAGYSKHLLSS 146
L C C+D+ T+ G +HL+ S
Sbjct: 753 LACSRCRDRFWTYEGLERHLVMS 775
>AF416567-1|AAL27004.1| 870|Caenorhabditis elegans nuclear zinc
finger protein protein.
Length = 870
Score = 25.8 bits (54), Expect = 4.2
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +3
Query: 78 LICVHCKDKSATFAGYSKHLLSS 146
L C C+D+ T+ G +HL+ S
Sbjct: 753 LACSRCRDRFWTYEGLERHLVMS 775
>AF045645-3|AAC02610.2| 193|Caenorhabditis elegans Hypothetical
protein K02D7.2 protein.
Length = 193
Score = 25.4 bits (53), Expect = 5.5
Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Frame = +3
Query: 84 CVHCKDKSATFAGYSKHLLSSKAPC-CDEC 170
C HCK + HL + PC C++C
Sbjct: 72 CPHCKKVYRSPGALKMHLKTHSLPCVCNDC 101
>U41532-7|ABD63237.1| 769|Caenorhabditis elegans Hypothetical
protein F11D5.1c protein.
Length = 769
Score = 25.0 bits (52), Expect = 7.3
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = -2
Query: 64 RASCRIPAAPGDPHSSR 14
R +C I P DPHS+R
Sbjct: 308 RETCDIAVLPSDPHSAR 324
>U41532-6|AAF99908.2| 812|Caenorhabditis elegans Hypothetical
protein F11D5.1a protein.
Length = 812
Score = 25.0 bits (52), Expect = 7.3
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = -2
Query: 64 RASCRIPAAPGDPHSSR 14
R +C I P DPHS+R
Sbjct: 351 RETCDIAVLPSDPHSAR 367
>U00041-1|AAA50671.3| 2248|Caenorhabditis elegans Abnormal cell
lineage protein 13 protein.
Length = 2248
Score = 24.6 bits (51), Expect = 9.7
Identities = 11/21 (52%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
Frame = -3
Query: 195 LHLVPPSNCTHRS-TVPCLTV 136
+ LV PS+C+HRS + C TV
Sbjct: 1746 IQLVSPSDCSHRSMLLQCETV 1766
>AF245435-1|AAF87497.1| 2248|Caenorhabditis elegans zinc finger
protein LIN-13 protein.
Length = 2248
Score = 24.6 bits (51), Expect = 9.7
Identities = 11/21 (52%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
Frame = -3
Query: 195 LHLVPPSNCTHRS-TVPCLTV 136
+ LV PS+C+HRS + C TV
Sbjct: 1746 IQLVSPSDCSHRSMLLQCETV 1766
>AF099925-12|AAC69509.1| 257|Caenorhabditis elegans Hypothetical
protein K01A2.10 protein.
Length = 257
Score = 24.6 bits (51), Expect = 9.7
Identities = 14/47 (29%), Positives = 20/47 (42%)
Frame = +1
Query: 31 PPVLQEFGTRRVLTLISSVYIARIKAPPSPGTRNIYCQARHRAAMSA 171
PP+ R+ +SS ++ A PG I Q R +AM A
Sbjct: 206 PPMTSPSSPHRIFPPVSSGLLSASVAVTYPGNSRISIQKRSTSAMRA 252
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,467,562
Number of Sequences: 27780
Number of extensions: 94016
Number of successful extensions: 252
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 244
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 252
length of database: 12,740,198
effective HSP length: 50
effective length of database: 11,351,198
effective search space used: 227023960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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