Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_I19
         (212 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.              24   0.18 
AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8 ...    23   0.41 
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   2.2  
L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein pro...    20   2.9  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    20   3.8  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              20   3.8  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    20   3.8  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    19   8.9  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    19   8.9  

>DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.
          Length = 120

 Score = 24.2 bits (50), Expect = 0.18
 Identities = 13/44 (29%), Positives = 19/44 (43%)
 Frame = +3

Query: 9   PSLELCGSPGAAGIRHEARSYVNLICVHCKDKSATFAGYSKHLL 140
           P L+    P     R + +  +   CV C++     A Y KHLL
Sbjct: 15  PDLDNVTMPETTPRRKKNKKPLPTECVFCRNNGEEEAYYRKHLL 58


>AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8
           protein.
          Length = 208

 Score = 23.0 bits (47), Expect = 0.41
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +1

Query: 25  VDPPVLQEFGTRRVLTLISS 84
           V+P + ++F T RVL  ISS
Sbjct: 158 VEPALEEQFATGRVLACISS 177


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 20.6 bits (41), Expect = 2.2
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +3

Query: 12  SLELCGSPGAAGIRHE 59
           S  + GSPG+ GIR +
Sbjct: 281 STTMNGSPGSGGIRSD 296


>L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein
           protein.
          Length = 81

 Score = 20.2 bits (40), Expect = 2.9
 Identities = 8/39 (20%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
 Frame = +3

Query: 57  EARSYVNLICVHCKDKSATFAGYSKHLLSSKAPC-CDEC 170
           E ++  +  C +C+    +      H+ +   PC C  C
Sbjct: 10  EGQAKKSFSCKYCEKVYVSLGALKMHIRTHTLPCKCHLC 48


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 19.8 bits (39), Expect = 3.8
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +3

Query: 78  LICVHCKDKSATFAGY 125
           +IC  CKD ++T A Y
Sbjct: 23  VICFVCKDITSTSALY 38


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 19.8 bits (39), Expect = 3.8
 Identities = 9/28 (32%), Positives = 11/28 (39%)
 Frame = +1

Query: 103  KAPPSPGTRNIYCQARHRAAMSAVARRH 186
            K PP PG+    C    R  +    R H
Sbjct: 1652 KLPPVPGSNYNTCDRIKRGTVIRSIRSH 1679



 Score = 18.6 bits (36), Expect = 8.9
 Identities = 6/16 (37%), Positives = 9/16 (56%)
 Frame = -3

Query: 153  VPCLTVDVSSTRRRWR 106
            +PCL V V +    W+
Sbjct: 1296 LPCLAVGVPAPEVTWK 1311


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 19.8 bits (39), Expect = 3.8
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +1

Query: 67  LTLISSVYIARIKAPPSPGTRNIYCQ 144
           +T+++ V  A  + P   GTR   CQ
Sbjct: 656 VTILALVRDATARLPNGEGTRADICQ 681


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 18.6 bits (36), Expect = 8.9
 Identities = 5/5 (100%), Positives = 5/5 (100%)
 Frame = +3

Query: 153 PCCDE 167
           PCCDE
Sbjct: 216 PCCDE 220


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 18.6 bits (36), Expect = 8.9
 Identities = 10/27 (37%), Positives = 12/27 (44%)
 Frame = +3

Query: 51  RHEARSYVNLICVHCKDKSATFAGYSK 131
           R   R+   LI   C+D  A   GY K
Sbjct: 588 RSITRNATALIKKLCRDNPAERLGYQK 614


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 63,925
Number of Sequences: 438
Number of extensions: 1103
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 45
effective length of database: 126,633
effective search space used:  3165825
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.4 bits)