Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_I14
         (310 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC725.04 |||oxalyl-CoA decarboxylase |Schizosaccharomyces pomb...    54   5e-09
SPBP35G2.07 |ilv1||acetolactate synthase catalytic subunit|Schiz...    34   0.006
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9...    25   2.6  
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p...    25   2.6  
SPCC4G3.10c |rhp42|rhp4b|DNA repair protein Rhp42|Schizosaccharo...    24   5.9  
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|...    24   5.9  
SPAC23H4.08 |||RNA polymerase II associated protein |Schizosacch...    23   7.9  

>SPBC725.04 |||oxalyl-CoA decarboxylase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 574

 Score = 54.0 bits (124), Expect = 5e-09
 Identities = 31/103 (30%), Positives = 50/103 (48%), Gaps = 1/103 (0%)
 Frame = +1

Query: 4   EGIGGFQEWPHVESSRLYCKYAARPPSPRLIPQHVEKAVMLASAGRPGVSYLDVPGTLLM 183
           +  G FQE   V     + K A RPPSP+++   + +A  ++  G PG  Y+D+P   + 
Sbjct: 106 QNCGAFQELDQVSYLSPHTKLAVRPPSPKMVVDSIRRAYRVSMTGTPGTCYVDLPANYIE 165

Query: 184 AEVDE-NKVPMNYHNADTVTLAHPHPALVAQAADLLAKAERPL 309
           + VD+  K P+      +     P P  + +AA  L  A+ PL
Sbjct: 166 STVDDFPKDPL--PPIPSSPKCAPDPTQLQKAAYYLKNAKAPL 206


>SPBP35G2.07 |ilv1||acetolactate synthase catalytic
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 669

 Score = 33.9 bits (74), Expect = 0.006
 Identities = 29/110 (26%), Positives = 53/110 (48%), Gaps = 7/110 (6%)
 Frame = +1

Query: 1   AEGIGGFQEWPHVESSRLYCKYAARPPSPRLIPQHVEKAVMLASAGRPGVSYLDVPGTLL 180
           A G   FQE   V  SR   K+         +P+ +++A  +A++GRPG   +D+P  + 
Sbjct: 190 AIGSDAFQEADMVGISRSCTKWNVMVKDVADLPRRIDEAFEIATSGRPGPVLVDLPKDVT 249

Query: 181 MAEVDE-----NKVP-MNYHNADTVTLAHPH-PALVAQAADLLAKAERPL 309
            + + E     + VP MN    + +     +  A + + A+LL  A++P+
Sbjct: 250 ASVLKEPIPILSSVPSMNRRMKEVLEEGSKNVTAKIDRVANLLKLAKKPV 299


>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
          Srb9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1223

 Score = 25.0 bits (52), Expect = 2.6
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +1

Query: 22 QEWPHVESSRLYCKY 66
          ++WPHV S R+Y  Y
Sbjct: 12 RQWPHVLSLRVYASY 26


>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
           protein 1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 567

 Score = 25.0 bits (52), Expect = 2.6
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +1

Query: 208 PMNYHNADTVTLAHPHPALVA 270
           P NY N+ + T  H HPA  A
Sbjct: 545 PSNYENSRSTTPYHAHPATSA 565


>SPCC4G3.10c |rhp42|rhp4b|DNA repair protein
           Rhp42|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 686

 Score = 23.8 bits (49), Expect = 5.9
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
 Frame = -1

Query: 199 FHQLQPSVEFQVRLGRRHLDVQPRLAL--RLSPRAVV*DAAMEAALHTYSKDDWTPH 35
           FH+ Q S+   ++ G R L  Q   AL   L+ +A +  +       T S DDW+PH
Sbjct: 252 FHEYQASL-LSLK-GSRDLAAQGFTALCRSLNLKARLIFSLQPLTFSTASYDDWSPH 306


>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 732

 Score = 23.8 bits (49), Expect = 5.9
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -2

Query: 144 WTSSRG*HYGFLHV 103
           WT+ RG  YG LH+
Sbjct: 676 WTNERGEVYGILHI 689


>SPAC23H4.08 |||RNA polymerase II associated protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 277

 Score = 23.4 bits (48), Expect = 7.9
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +1

Query: 238 TLAHPHPALVAQAADLLAKAERPL 309
           T  HPHP L +   + L+  + PL
Sbjct: 150 TTYHPHPQLDSMIQEYLSNGDLPL 173


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.316    0.133    0.403 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,208,955
Number of Sequences: 5004
Number of extensions: 21050
Number of successful extensions: 60
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 79841814
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)