Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_I13
(444 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_03_0116 - 15440263-15441024,15441097-15443451 31 0.55
02_04_0049 + 19238794-19239003,19239359-19239505,19239595-192397... 30 0.96
09_04_0284 + 16384553-16384755,16384884-16385199,16385889-163859... 29 1.3
07_03_0562 + 19535801-19535865,19535972-19536017,19536125-195362... 29 1.3
04_03_0824 + 20086639-20087263,20087282-20087463,20087569-200877... 29 1.7
03_06_0619 - 35136435-35136728,35137155-35137358,35137476-351376... 28 2.9
01_06_1164 - 35026345-35026954,35027853-35027939,35028120-350284... 28 3.9
09_04_0591 + 18813557-18813663,18814332-18814392,18814526-188146... 27 5.1
11_01_0301 + 2259242-2259682 27 6.8
05_01_0543 - 4733239-4733704,4733805-4734190 27 6.8
08_01_0777 - 7542478-7544988 27 9.0
08_01_0532 - 4611650-4612706,4613405-4613757 27 9.0
01_03_0179 + 13500413-13500768,13502522-13502642,13502876-135029... 27 9.0
>02_03_0116 - 15440263-15441024,15441097-15443451
Length = 1038
Score = 30.7 bits (66), Expect = 0.55
Identities = 14/40 (35%), Positives = 25/40 (62%)
Frame = +3
Query: 249 RKFARASCLAGRASVLRRSLPLVKKYIRDGVRYATRIQRR 368
R+ RA+ +A R+S + S+PL ++ +R+G I+RR
Sbjct: 144 RRARRAAAVARRSSAIPSSMPLTQEDVREGPDARLNIERR 183
>02_04_0049 +
19238794-19239003,19239359-19239505,19239595-19239750,
19239870-19239992,19240073-19240241,19240700-19240782,
19240917-19241018,19241104-19241192,19241317-19241407,
19241734-19241847,19242371-19242447,19242534-19242612,
19242710-19242778,19243022-19243197,19243309-19243365,
19243460-19243550,19243644-19243742,19243878-19244063
Length = 705
Score = 29.9 bits (64), Expect = 0.96
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +3
Query: 312 LVKKYIRDGVRYATRIQRRTVRENASCPSNCPPNSRRYQYH 434
LV+ +RDG Y TR R+++R S P++ R+ Y+
Sbjct: 418 LVRSLMRDGTEYVTRHSRKSLRVLGSVGEPINPSAWRWFYN 458
>09_04_0284 +
16384553-16384755,16384884-16385199,16385889-16385971,
16386802-16386849,16387701-16387965,16388058-16388189,
16388313-16388448,16388557-16388594
Length = 406
Score = 29.5 bits (63), Expect = 1.3
Identities = 19/56 (33%), Positives = 29/56 (51%)
Frame = +3
Query: 246 GRKFARASCLAGRASVLRRSLPLVKKYIRDGVRYATRIQRRTVRENASCPSNCPPN 413
G+++ A+ + R + SL LV+ R G+ Y I RRT ++ P N PPN
Sbjct: 70 GKRYGDAAEVQRRFRIFSESLELVRSTNRRGLPYRLGINRRT---SSRAPPN-PPN 121
>07_03_0562 +
19535801-19535865,19535972-19536017,19536125-19536223,
19536588-19536674,19537545-19537613,19537702-19538710,
19539217-19539365,19539453-19540487,19540488-19541003
Length = 1024
Score = 29.5 bits (63), Expect = 1.3
Identities = 27/86 (31%), Positives = 34/86 (39%), Gaps = 2/86 (2%)
Frame = +2
Query: 173 VQKRPCLFDSNDPNYGDRAEKTRCWEEV--CESVVPSWTSLGSSEKFTAGKEVHQRWRPI 346
VQ +P S++ N A TR E + ESV P SL + T G V P+
Sbjct: 568 VQNQPRSLVSSEANVQRSASMTRNNERIRPTESVNPKDMSLSLLNRITTGNNVVGVPGPL 627
Query: 347 RDSYTKTYRQGKCVLPEQLSTEQSPL 424
K G P+Q STE L
Sbjct: 628 ESPEIKPRLFGVTAEPQQRSTEAPSL 653
>04_03_0824 +
20086639-20087263,20087282-20087463,20087569-20087724,
20087867-20087989,20088079-20088247,20088384-20088466,
20088641-20088742,20089246-20089359,20089735-20089811,
20089884-20089962,20090060-20090128,20090235-20090410,
20090460-20090561,20090678-20090768,20090878-20090976,
20091141-20091326
Length = 810
Score = 29.1 bits (62), Expect = 1.7
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +3
Query: 312 LVKKYIRDGVRYATRIQRRTVRENASCPSNCPPNSRRYQY 431
L++ +RDG Y TR R+++R S P + R+ Y
Sbjct: 508 LIRALMRDGTEYVTRYSRKSLRVLGSVGEPINPTAWRWFY 547
>03_06_0619 -
35136435-35136728,35137155-35137358,35137476-35137646,
35137902-35138050,35138380-35138527,35138614-35138682,
35138767-35139027,35139223-35139417,35139772-35139888,
35140026-35140961
Length = 847
Score = 28.3 bits (60), Expect = 2.9
Identities = 11/19 (57%), Positives = 14/19 (73%), Gaps = 1/19 (5%)
Frame = +2
Query: 218 GDRA-EKTRCWEEVCESVV 271
G RA E RCWE++C S+V
Sbjct: 227 GGRAYEHGRCWEDICHSIV 245
>01_06_1164 -
35026345-35026954,35027853-35027939,35028120-35028493,
35037372-35038586,35038659-35039316,35039331-35041012
Length = 1541
Score = 27.9 bits (59), Expect = 3.9
Identities = 13/40 (32%), Positives = 24/40 (60%)
Frame = +3
Query: 249 RKFARASCLAGRASVLRRSLPLVKKYIRDGVRYATRIQRR 368
R+ RA+ +A R+S + S+P ++ +R+G I+RR
Sbjct: 144 RRARRAAAVARRSSAIPSSMPPTQEDVREGPDARLNIERR 183
>09_04_0591 +
18813557-18813663,18814332-18814392,18814526-18814639,
18814923-18815054,18815380-18815774,18815896-18815995,
18816099-18816158,18816240-18816326,18816511-18816639,
18816888-18817187
Length = 494
Score = 27.5 bits (58), Expect = 5.1
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = -3
Query: 346 YRTPSLMYFFTSGKLLRRTEAR-PARHDALANFLPAS 239
YR Y SG + +R P+RH +L NFL AS
Sbjct: 121 YRKAFDQYLSESGSVTSEEVSRSPSRHSSLVNFLSAS 157
>11_01_0301 + 2259242-2259682
Length = 146
Score = 27.1 bits (57), Expect = 6.8
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +2
Query: 167 SEVQKRPCLFDSNDPNYGDRAEKTRCWEEVCESVV 271
+++Q P D NDPNY D + EEV + VV
Sbjct: 83 AQLQPAPPAVDPNDPNY-DEGDGAGVDEEVAKEVV 116
>05_01_0543 - 4733239-4733704,4733805-4734190
Length = 283
Score = 27.1 bits (57), Expect = 6.8
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = -1
Query: 63 VRIWRAIYTCDVRASCRIPAA 1
+R+ RA+ TCDVRA R AA
Sbjct: 197 LRVMRAVLTCDVRAVLRDVAA 217
>08_01_0777 - 7542478-7544988
Length = 836
Score = 26.6 bits (56), Expect = 9.0
Identities = 18/63 (28%), Positives = 26/63 (41%)
Frame = +2
Query: 239 RCWEEVCESVVPSWTSLGSSEKFTAGKEVHQRWRPIRDSYTKTYRQGKCVLPEQLSTEQS 418
+C E C V + +LGS GK+ + W I+D+ Q KC + L
Sbjct: 347 KCIVEKCHGVPLAAKTLGS---VLFGKQDVKEWLRIKDANLWNIEQNKCDILPALKLSYD 403
Query: 419 PLP 427
LP
Sbjct: 404 ALP 406
>08_01_0532 - 4611650-4612706,4613405-4613757
Length = 469
Score = 26.6 bits (56), Expect = 9.0
Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
Frame = +2
Query: 197 DSNDPNYGDRAEKTRCW-EEVCESVVPSWTSLGSSEKFTAGKEVHQRWRPIRDSYTKT 367
D + N R EK W EE ++ +W + A K Q W + +SY KT
Sbjct: 164 DDGNGNGNVRTEKRILWTEEEDIRLMSAWIEHSTDSTCGADKGGGQYWGEVVESYNKT 221
>01_03_0179 + 13500413-13500768,13502522-13502642,13502876-13502998,
13504409-13504497,13504612-13504696,13504852-13505011,
13505096-13505160,13505296-13505349,13505437-13505527,
13505685-13505986,13506084-13506365,13506451-13506764,
13506920-13507080,13507202-13507305,13507379-13507535,
13507652-13507896,13507995-13508327,13508428-13508751,
13508816-13508899,13509001-13509169,13509610-13509731,
13510538-13510792,13511115-13511252
Length = 1377
Score = 26.6 bits (56), Expect = 9.0
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = +1
Query: 331 EMASDTRLVYKDVP-SGKMRLARAIVHRTVAVTSITGR 441
E+ ++ +++ D P SG A AIV RTV T TGR
Sbjct: 1055 ELVANPSIIFMDEPTSGLDARAAAIVMRTVRKTVDTGR 1092
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,314,305
Number of Sequences: 37544
Number of extensions: 175200
Number of successful extensions: 569
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 561
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 568
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 847740284
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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