Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_I13
         (444 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81457-1|CAB03812.1|  423|Caenorhabditis elegans Hypothetical pr...    42   2e-04
AF036701-6|AAK68607.1|  139|Caenorhabditis elegans Hypothetical ...    40   8e-04
AC006661-6|AAF39889.1|  312|Caenorhabditis elegans Hypothetical ...    34   0.053
Z81554-3|CAB04505.1|  255|Caenorhabditis elegans Hypothetical pr...    32   0.16 
AL032631-6|CAA21574.1|  234|Caenorhabditis elegans Hypothetical ...    28   3.5  
Z75542-3|CAA99860.1|  359|Caenorhabditis elegans Hypothetical pr...    27   4.6  
Z83238-5|CAB05796.1|  304|Caenorhabditis elegans Hypothetical pr...    27   8.1  
Z73969-16|CAD44085.1|  254|Caenorhabditis elegans Hypothetical p...    27   8.1  
Z73969-15|CAA98238.1|  546|Caenorhabditis elegans Hypothetical p...    27   8.1  
Z73969-14|CAA98240.1|  541|Caenorhabditis elegans Hypothetical p...    27   8.1  
U88171-2|AAB42252.1|  434|Caenorhabditis elegans Glutamate-gated...    27   8.1  
U14525-1|AAA50786.1|  434|Caenorhabditis elegans avermectin-sens...    27   8.1  
U13019-3|AAC24452.2|  713|Caenorhabditis elegans Hypothetical pr...    27   8.1  
AF072380-1|AAC62467.1|  546|Caenorhabditis elegans Akt/PKB serin...    27   8.1  
AF072379-1|AAC62466.1|  541|Caenorhabditis elegans Akt/PKB serin...    27   8.1  

>Z81457-1|CAB03812.1|  423|Caenorhabditis elegans Hypothetical
           protein C01G12.1 protein.
          Length = 423

 Score = 42.3 bits (95), Expect = 2e-04
 Identities = 21/68 (30%), Positives = 36/68 (52%)
 Frame = +2

Query: 161 IISEVQKRPCLFDSNDPNYGDRAEKTRCWEEVCESVVPSWTSLGSSEKFTAGKEVHQRWR 340
           +I+EV+K PCL++ +    GD  E+ R WE + +++ P+           A +   +RW 
Sbjct: 11  LINEVRKYPCLYNHSRRGSGDTMERQRLWESIAKNIDPN----------CAAEFAKKRWL 60

Query: 341 PIRDSYTK 364
            +RD Y K
Sbjct: 61  QLRDRYRK 68


>AF036701-6|AAK68607.1|  139|Caenorhabditis elegans Hypothetical
           protein ZC416.1 protein.
          Length = 139

 Score = 39.9 bits (89), Expect = 8e-04
 Identities = 25/93 (26%), Positives = 41/93 (44%)
 Frame = +2

Query: 161 IISEVQKRPCLFDSNDPNYGDRAEKTRCWEEVCESVVPSWTSLGSSEKFTAGKEVHQRWR 340
           +I+EV+ RP L+D +D  Y   + +   W E+ E++             T  + V  RW+
Sbjct: 53  LIAEVKARPFLYDQSDEGYNLLSWRNSAWNEIAENLE------------TTSEHVKTRWK 100

Query: 341 PIRDSYTKTYRQGKCVLPEQLSTEQSPLPVSQA 439
            +RD Y K  ++ +          Q PL   QA
Sbjct: 101 TLRDRYKKEEKKERVSKKASSWVFQRPLKFIQA 133


>AC006661-6|AAF39889.1|  312|Caenorhabditis elegans Hypothetical
           protein H20J04.3 protein.
          Length = 312

 Score = 33.9 bits (74), Expect = 0.053
 Identities = 18/72 (25%), Positives = 34/72 (47%)
 Frame = +2

Query: 161 IISEVQKRPCLFDSNDPNYGDRAEKTRCWEEVCESVVPSWTSLGSSEKFTAGKEVHQRWR 340
           +I EV++ PCL+D  DP Y     +T+ W  + + +    T             ++++W+
Sbjct: 123 LILEVRRHPCLYDVRDPKYRHGDCRTQAWGMIIDKLRYPGTV----------PSIYKQWK 172

Query: 341 PIRDSYTKTYRQ 376
             RD Y +  R+
Sbjct: 173 KHRDRYVREKRR 184



 Score = 33.5 bits (73), Expect = 0.071
 Identities = 22/74 (29%), Positives = 33/74 (44%)
 Frame = +2

Query: 161 IISEVQKRPCLFDSNDPNYGDRAEKTRCWEEVCESVVPSWTSLGSSEKFTAGKEVHQRWR 340
           +I  V+   CLFD+ D  Y +   K R W+ +        T LG        + +  RW+
Sbjct: 10  LIEAVRHSRCLFDNTDRQYRNTEYKNRVWQRLV-------TVLGFDGD---PRMLSARWK 59

Query: 341 PIRDSYTKTYRQGK 382
            +RD Y K  R+ K
Sbjct: 60  QLRDKYGKEKRKQK 73


>Z81554-3|CAB04505.1|  255|Caenorhabditis elegans Hypothetical
           protein F57G4.6 protein.
          Length = 255

 Score = 32.3 bits (70), Expect = 0.16
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = +2

Query: 158 LIISEVQKRPCLFDSNDPNYGDRAEKTRCWEEV 256
           L + EV++ PCL+D  D +Y DR EK   W ++
Sbjct: 39  LFLQEVEQYPCLYDLTDKHYKDR-EKHDFWIKI 70


>AL032631-6|CAA21574.1|  234|Caenorhabditis elegans Hypothetical
           protein Y106G6H.4 protein.
          Length = 234

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 19/68 (27%), Positives = 32/68 (47%)
 Frame = +2

Query: 173 VQKRPCLFDSNDPNYGDRAEKTRCWEEVCESVVPSWTSLGSSEKFTAGKEVHQRWRPIRD 352
           +  RP L+DS        A K   + EV E +   +     S   T  +E+ + W+ ++D
Sbjct: 57  IAHRPGLWDSTREKVSSAARKN-LFAEVVEVINQQFVL---SPPLTI-EEIEKHWKNLKD 111

Query: 353 SYTKTYRQ 376
           +Y KT R+
Sbjct: 112 TYVKTRRK 119


>Z75542-3|CAA99860.1|  359|Caenorhabditis elegans Hypothetical
           protein F55D12.3 protein.
          Length = 359

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 12/42 (28%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = -2

Query: 443 HLP-VILVTATVRWTIARARRIFPDGTSLYTSRVSDAISDVL 321
           HLP ++LVTA   ++   A+ + PDGT ++  +    + +++
Sbjct: 189 HLPFMLLVTAMHSFSRKSAQMVHPDGTDVFQQKYKIKLENIM 230


>Z83238-5|CAB05796.1|  304|Caenorhabditis elegans Hypothetical
           protein T08G3.6 protein.
          Length = 304

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = +3

Query: 324 YIRDGVRYATRIQRRTVRENASCPSNCP 407
           Y RDG + A    RR + E A CP   P
Sbjct: 151 YFRDGEKKAWSRTRRCLTEEAGCPCTDP 178


>Z73969-16|CAD44085.1|  254|Caenorhabditis elegans Hypothetical
           protein C12D8.10c protein.
          Length = 254

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
 Frame = +2

Query: 278 WTSLGSSEKFTAGKEVHQRWRPIRDSYTKTYRQGKCVLPEQL-STEQSP 421
           WT++     +    EV QRW    +S +K Y+       E+L  T Q P
Sbjct: 90  WTTVIERTFYAESAEVRQRWIHAIESISKKYKGTNANPQEELMETNQQP 138


>Z73969-15|CAA98238.1|  546|Caenorhabditis elegans Hypothetical
           protein C12D8.10b protein.
          Length = 546

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
 Frame = +2

Query: 278 WTSLGSSEKFTAGKEVHQRWRPIRDSYTKTYRQGKCVLPEQL-STEQSP 421
           WT++     +    EV QRW    +S +K Y+       E+L  T Q P
Sbjct: 90  WTTVIERTFYAESAEVRQRWIHAIESISKKYKGTNANPQEELMETNQQP 138


>Z73969-14|CAA98240.1|  541|Caenorhabditis elegans Hypothetical
           protein C12D8.10a protein.
          Length = 541

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
 Frame = +2

Query: 278 WTSLGSSEKFTAGKEVHQRWRPIRDSYTKTYRQGKCVLPEQL-STEQSP 421
           WT++     +    EV QRW    +S +K Y+       E+L  T Q P
Sbjct: 90  WTTVIERTFYAESAEVRQRWIHAIESISKKYKGTNANPQEELMETNQQP 138


>U88171-2|AAB42252.1|  434|Caenorhabditis elegans Glutamate-gated
           chloride channelprotein 2 protein.
          Length = 434

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 10/15 (66%), Positives = 13/15 (86%)
 Frame = -2

Query: 386 RIFPDGTSLYTSRVS 342
           RI+PDG  LY+SR+S
Sbjct: 142 RIYPDGKILYSSRIS 156


>U14525-1|AAA50786.1|  434|Caenorhabditis elegans
           avermectin-sensitive glutamate-gated chloride channel
           GluCl beta protein.
          Length = 434

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 10/15 (66%), Positives = 13/15 (86%)
 Frame = -2

Query: 386 RIFPDGTSLYTSRVS 342
           RI+PDG  LY+SR+S
Sbjct: 142 RIYPDGKILYSSRIS 156


>U13019-3|AAC24452.2|  713|Caenorhabditis elegans Hypothetical
           protein T12A2.15a protein.
          Length = 713

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = +2

Query: 269 VPSWTSLGSSEKFT-AGKEVHQRWRPIRDSYTKTY 370
           +P+W     +E+     K +HQ W P    YTKT+
Sbjct: 75  LPAWVQFPDTERVEWLNKVIHQLW-PYVGEYTKTF 108


>AF072380-1|AAC62467.1|  546|Caenorhabditis elegans Akt/PKB
           serine/threonine kinase protein.
          Length = 546

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
 Frame = +2

Query: 278 WTSLGSSEKFTAGKEVHQRWRPIRDSYTKTYRQGKCVLPEQL-STEQSP 421
           WT++     +    EV QRW    +S +K Y+       E+L  T Q P
Sbjct: 90  WTTVIERTFYAESAEVRQRWIHAIESISKKYKGTNANPQEELMETNQQP 138


>AF072379-1|AAC62466.1|  541|Caenorhabditis elegans Akt/PKB
           serine/threonine kinase protein.
          Length = 541

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
 Frame = +2

Query: 278 WTSLGSSEKFTAGKEVHQRWRPIRDSYTKTYRQGKCVLPEQL-STEQSP 421
           WT++     +    EV QRW    +S +K Y+       E+L  T Q P
Sbjct: 90  WTTVIERTFYAESAEVRQRWIHAIESISKKYKGTNANPQEELMETNQQP 138


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,547,194
Number of Sequences: 27780
Number of extensions: 145812
Number of successful extensions: 499
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 477
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 497
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 767282256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)