Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_I13
         (444 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    25   0.28 
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    25   0.37 
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    25   0.37 
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    24   0.86 
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    23   1.1  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    23   1.5  
X91509-1|CAA62809.1|  103|Apis mellifera histone H4 protein.           21   8.0  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    21   8.0  

>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 25.4 bits (53), Expect = 0.28
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +1

Query: 292 FFGEVYRW*RSTSEMASDTRLVY 360
           ++G+VY+W  + S    DTR  Y
Sbjct: 8   YYGDVYQWNHTVSSGERDTRTEY 30


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 25.0 bits (52), Expect = 0.37
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = -2

Query: 386 RIFPDGTSLYTSRVSDAIS 330
           RIFP+G+ LY+ R+S  +S
Sbjct: 141 RIFPNGSVLYSIRISLTLS 159


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 25.0 bits (52), Expect = 0.37
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = -2

Query: 386 RIFPDGTSLYTSRVSDAIS 330
           RIFP+G+ LY+ R+S  +S
Sbjct: 141 RIFPNGSVLYSIRISLTLS 159


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 23.8 bits (49), Expect = 0.86
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +1

Query: 331 EMASDTRLVYKDVPSGKMRLARAIVHRTVAVT 426
           E   DT+ +Y D+ S   RL R +++ T  +T
Sbjct: 29  EANPDTKRLYDDLLSNYNRLIRPVMNNTETLT 60


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 23.4 bits (48), Expect = 1.1
 Identities = 11/25 (44%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = -2

Query: 407 WTIARARRIFPDGTS-LYTSRVSDA 336
           WT+ R +  F DGT+  YT+ V +A
Sbjct: 454 WTVLRDKGHFDDGTTRFYTACVVEA 478


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 23.0 bits (47), Expect = 1.5
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +2

Query: 329 QRWRPIRDSYTKTYRQGK 382
           +RWRP+R   +  +  GK
Sbjct: 126 ERWRPLRSRLSPIFTSGK 143


>X91509-1|CAA62809.1|  103|Apis mellifera histone H4 protein.
          Length = 103

 Score = 20.6 bits (41), Expect = 8.0
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +3

Query: 315 VKKYIRDGVRYATRIQRRTV 374
           ++  IRD V Y    +R+TV
Sbjct: 63  LENVIRDAVTYTEHTKRKTV 82


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 20.6 bits (41), Expect = 8.0
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = -1

Query: 45  IYTCDVRASCRIP 7
           IY  DVR  CR P
Sbjct: 403 IYKYDVRDGCRTP 415


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 104,375
Number of Sequences: 438
Number of extensions: 1706
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11574126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)