Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_I12
         (493 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0599 + 25395606-25395705,25396465-25396544,25396901-253969...    34   0.071
02_01_0079 + 554635-556098                                             31   0.66 
07_01_1113 - 10292781-10293299                                         30   1.2  
12_01_0826 - 7629892-7629964,7630052-7630135,7630216-7630314,763...    29   2.7  
01_05_0273 - 20283965-20284085,20284197-20284348,20284828-202850...    28   3.5  
11_06_0099 + 20070925-20073867                                         27   6.2  
03_02_0163 - 6056959-6058989                                           27   8.2  

>11_06_0599 +
           25395606-25395705,25396465-25396544,25396901-25396966,
           25397076-25397123,25397226-25397293,25397404-25397476,
           25397573-25397734,25398042-25398236,25398325-25398413,
           25398487-25398676
          Length = 356

 Score = 33.9 bits (74), Expect = 0.071
 Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
 Frame = -1

Query: 259 VEELEPFFRNESESHFTRFSEPDWSWEVLL---ITYTSNICGGASGNKCCVRGLFGRS 95
           V  L P+F    E  +  FS   W  E ++   +T    IC G+  +  C R ++GRS
Sbjct: 243 VPHLPPYFCYLGEWTYHHFSREVWLHETIVGNVVTRNETICDGSGEDPTCSRSVYGRS 300


>02_01_0079 + 554635-556098
          Length = 487

 Score = 30.7 bits (66), Expect = 0.66
 Identities = 19/51 (37%), Positives = 26/51 (50%)
 Frame = -1

Query: 394 GGENDHNEQ*KTSVVLMFHDVYLLAE*VRREADAKCVGTSYTSL*VEELEP 242
           G  +  N+Q     V++     L+AE  RR  D +C GTS+T L   EL P
Sbjct: 436 GEPSPGNKQCAAKEVVVATACMLVAELFRRYDDFECDGTSFTKLDKRELTP 486


>07_01_1113 - 10292781-10293299
          Length = 172

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = +2

Query: 176 NFPRPVRLTE-PGKVRLGFIPEEWFQFFHSKTGVTGPYTFGVGLT 307
           N PR  R T  PG +RL  + +   +  H +    GP+  G+GL+
Sbjct: 100 NPPRSARTTSAPGSLRLPEVAQRVVELLHHRHWWFGPWALGLGLS 144


>12_01_0826 -
           7629892-7629964,7630052-7630135,7630216-7630314,
           7630391-7630449,7630804-7630888,7630961-7631058,
           7631209-7631355,7631433-7631525,7631642-7631770,
           7631859-7631912,7632133-7632309,7632396-7632481,
           7634234-7634324,7634433-7634531,7634618-7634694,
           7634784-7634952,7639551-7639642,7639712-7639825,
           7640933-7641038,7641133-7641183,7641315-7641416,
           7642581-7642655,7642768-7642965,7642998-7643123
          Length = 827

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = +2

Query: 8   VFVLRSTYFTRFTVVNLRIKMLSRVA-LRSAAAKQSPYTALIARSS 142
           +FV     +T F   +LR +  S++A LR+ A +QS  T  I RS+
Sbjct: 439 IFVSHKDEYTEFEQASLRQQYQSKMAELRAEAKQQSESTGTIGRSN 484


>01_05_0273 -
           20283965-20284085,20284197-20284348,20284828-20285001,
           20285082-20285331,20285782-20285898,20286412-20286474,
           20286568-20286740
          Length = 349

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 12/33 (36%), Positives = 22/33 (66%)
 Frame = -2

Query: 213 LPGSVSLTGLGKFFSSRTPATSVVELLAISAVY 115
           + GSV++ GLG  +SS T ++++  LL + A +
Sbjct: 80  IAGSVNIYGLGLSYSSATSSSAISNLLPVLAFF 112


>11_06_0099 + 20070925-20073867
          Length = 980

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +2

Query: 386 FATKKFGPQLSAWLDKEVDAVESSWNE 466
           FA+   GP  S WL  +VD V  + N+
Sbjct: 470 FASITMGPSFSRWLQSQVDIVALAMND 496


>03_02_0163 - 6056959-6058989
          Length = 676

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
 Frame = -1

Query: 259 VEELEPFFRNESESHFTRFSEPDWSWEVLLITY--TSNICG 143
           VEE E  FR+   S  +R     WS+  ++  Y  T N+ G
Sbjct: 375 VEEAEEIFRDMKASMDSRSKPDSWSYSSMVTLYSCTGNVAG 415


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,662,717
Number of Sequences: 37544
Number of extensions: 307561
Number of successful extensions: 876
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 864
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 876
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1023611560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)