Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_I12
         (493 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X60221-1|CAA42782.1|  256|Homo sapiens H+-ATP synthase subunit b...    93   4e-19
BC016350-1|AAH16350.1|  256|Homo sapiens ATP synthase, H+ transp...    93   5e-19
BC005366-1|AAH05366.1|  256|Homo sapiens ATP synthase, H+ transp...    93   5e-19
AY871272-1|AAX11428.1|  256|Homo sapiens cell proliferation-indu...    93   5e-19
AL390195-7|CAC36042.1|  256|Homo sapiens ATP synthase, H+ transp...    93   5e-19
AK223018-1|BAD96738.1|  256|Homo sapiens ATP synthase, H+ transp...    93   5e-19
BC005960-1|AAH05960.1|  256|Homo sapiens ATP synthase, H+ transp...    90   3e-18
AL390195-8|CAI15628.1|  195|Homo sapiens ATP synthase, H+ transp...    58   2e-08

>X60221-1|CAA42782.1|  256|Homo sapiens H+-ATP synthase subunit b
           protein.
          Length = 256

 Score = 93.5 bits (222), Expect = 4e-19
 Identities = 56/127 (44%), Positives = 71/127 (55%), Gaps = 5/127 (3%)
 Frame = +2

Query: 68  MLSRVALRSAAAKQSPYTALIARSSTTDVAGVRDEKN-----FPRPVRLTEPGKVRLGFI 232
           MLSRV L SAAA  +P     A      +   R          P P      GKVR G I
Sbjct: 1   MLSRVVL-SAAATAAPSLKNAAFLGPGVLQATRTFHTGQPHLVPVPPLPEYGGKVRYGLI 59

Query: 233 PEEWFQFFHSKTGVTGPYTFGVGLTTYLFSKEIYVMEHEYYTGLSLLVMVIFATKKFGPQ 412
           PEE+FQF + KTGVTGPY  G GL  Y  SKEIYV+  E +T LS+L ++++  KK+GP 
Sbjct: 60  PEEFFQFLYPKTGVTGPYVLGTGLVLYALSKEIYVISAETFTALSVLGVMVYGIKKYGPF 119

Query: 413 LSAWLDK 433
           ++ + DK
Sbjct: 120 VADFADK 126


>BC016350-1|AAH16350.1|  256|Homo sapiens ATP synthase, H+
           transporting, mitochondrial F0 complex, subunit B1
           protein.
          Length = 256

 Score = 93.1 bits (221), Expect = 5e-19
 Identities = 56/127 (44%), Positives = 71/127 (55%), Gaps = 5/127 (3%)
 Frame = +2

Query: 68  MLSRVALRSAAAKQSPYTALIARSSTTDVAGVRDEKN-----FPRPVRLTEPGKVRLGFI 232
           MLSRV L SAAA  +P     A      +   R          P P      GKVR G I
Sbjct: 1   MLSRVVL-SAAATAAPSLKNAAFLGPGVLQATRTFHTGQPHLVPVPPLPEYGGKVRYGLI 59

Query: 233 PEEWFQFFHSKTGVTGPYTFGVGLTTYLFSKEIYVMEHEYYTGLSLLVMVIFATKKFGPQ 412
           PEE+FQF + KTGVTGPY  G GL  Y  SKEIYV+  E +T LS+L ++++  KK+GP 
Sbjct: 60  PEEFFQFLYPKTGVTGPYVLGTGLILYALSKEIYVISAETFTALSVLGVMVYGIKKYGPF 119

Query: 413 LSAWLDK 433
           ++ + DK
Sbjct: 120 VADFADK 126


>BC005366-1|AAH05366.1|  256|Homo sapiens ATP synthase, H+
           transporting, mitochondrial F0 complex, subunit B1
           protein.
          Length = 256

 Score = 93.1 bits (221), Expect = 5e-19
 Identities = 56/127 (44%), Positives = 71/127 (55%), Gaps = 5/127 (3%)
 Frame = +2

Query: 68  MLSRVALRSAAAKQSPYTALIARSSTTDVAGVRDEKN-----FPRPVRLTEPGKVRLGFI 232
           MLSRV L SAAA  +P     A      +   R          P P      GKVR G I
Sbjct: 1   MLSRVVL-SAAATAAPSLKNAAFLGPGVLQATRTFHTGQPHLVPVPPLPEYGGKVRYGLI 59

Query: 233 PEEWFQFFHSKTGVTGPYTFGVGLTTYLFSKEIYVMEHEYYTGLSLLVMVIFATKKFGPQ 412
           PEE+FQF + KTGVTGPY  G GL  Y  SKEIYV+  E +T LS+L ++++  KK+GP 
Sbjct: 60  PEEFFQFLYPKTGVTGPYVLGTGLILYALSKEIYVISAETFTALSVLGVMVYGIKKYGPF 119

Query: 413 LSAWLDK 433
           ++ + DK
Sbjct: 120 VADFADK 126


>AY871272-1|AAX11428.1|  256|Homo sapiens cell
           proliferation-inducing protein 47 protein.
          Length = 256

 Score = 93.1 bits (221), Expect = 5e-19
 Identities = 56/127 (44%), Positives = 71/127 (55%), Gaps = 5/127 (3%)
 Frame = +2

Query: 68  MLSRVALRSAAAKQSPYTALIARSSTTDVAGVRDEKN-----FPRPVRLTEPGKVRLGFI 232
           MLSRV L SAAA  +P     A      +   R          P P      GKVR G I
Sbjct: 1   MLSRVVL-SAAATAAPSLKNAAFLGPGVLQATRTFHTGQPHLVPVPPLPEYGGKVRYGLI 59

Query: 233 PEEWFQFFHSKTGVTGPYTFGVGLTTYLFSKEIYVMEHEYYTGLSLLVMVIFATKKFGPQ 412
           PEE+FQF + KTGVTGPY  G GL  Y  SKEIYV+  E +T LS+L ++++  KK+GP 
Sbjct: 60  PEEFFQFLYPKTGVTGPYVLGTGLILYALSKEIYVISAETFTALSVLGVMVYGIKKYGPF 119

Query: 413 LSAWLDK 433
           ++ + DK
Sbjct: 120 VADFADK 126


>AL390195-7|CAC36042.1|  256|Homo sapiens ATP synthase, H+
           transporting, mitochondrial F0 complex, subunit B1
           protein.
          Length = 256

 Score = 93.1 bits (221), Expect = 5e-19
 Identities = 56/127 (44%), Positives = 71/127 (55%), Gaps = 5/127 (3%)
 Frame = +2

Query: 68  MLSRVALRSAAAKQSPYTALIARSSTTDVAGVRDEKN-----FPRPVRLTEPGKVRLGFI 232
           MLSRV L SAAA  +P     A      +   R          P P      GKVR G I
Sbjct: 1   MLSRVVL-SAAATAAPSLKNAAFLGPGVLQATRTFHTGQPHLVPVPPLPEYGGKVRYGLI 59

Query: 233 PEEWFQFFHSKTGVTGPYTFGVGLTTYLFSKEIYVMEHEYYTGLSLLVMVIFATKKFGPQ 412
           PEE+FQF + KTGVTGPY  G GL  Y  SKEIYV+  E +T LS+L ++++  KK+GP 
Sbjct: 60  PEEFFQFLYPKTGVTGPYVLGTGLILYALSKEIYVISAETFTALSVLGVMVYGIKKYGPF 119

Query: 413 LSAWLDK 433
           ++ + DK
Sbjct: 120 VADFADK 126


>AK223018-1|BAD96738.1|  256|Homo sapiens ATP synthase, H+
           transporting, mitochondrial F0 complex, subunit b
           isoform 1 pr protein.
          Length = 256

 Score = 93.1 bits (221), Expect = 5e-19
 Identities = 56/127 (44%), Positives = 71/127 (55%), Gaps = 5/127 (3%)
 Frame = +2

Query: 68  MLSRVALRSAAAKQSPYTALIARSSTTDVAGVRDEKN-----FPRPVRLTEPGKVRLGFI 232
           MLSRV L SAAA  +P     A      +   R          P P      GKVR G I
Sbjct: 1   MLSRVVL-SAAATAAPSLKNAAFLGPGVLQATRTFHTGQPHLVPVPPLPEYGGKVRYGLI 59

Query: 233 PEEWFQFFHSKTGVTGPYTFGVGLTTYLFSKEIYVMEHEYYTGLSLLVMVIFATKKFGPQ 412
           PEE+FQF + KTGVTGPY  G GL  Y  SKEIYV+  E +T LS+L ++++  KK+GP 
Sbjct: 60  PEEFFQFLYPKTGVTGPYVLGTGLILYALSKEIYVISAETFTALSVLGVMVYGIKKYGPF 119

Query: 413 LSAWLDK 433
           ++ + DK
Sbjct: 120 VADFADK 126


>BC005960-1|AAH05960.1|  256|Homo sapiens ATP synthase, H+
           transporting, mitochondrial F0 complex, subunit B1
           protein.
          Length = 256

 Score = 90.2 bits (214), Expect = 3e-18
 Identities = 55/127 (43%), Positives = 70/127 (55%), Gaps = 5/127 (3%)
 Frame = +2

Query: 68  MLSRVALRSAAAKQSPYTALIARSSTTDVAGVRDEKN-----FPRPVRLTEPGKVRLGFI 232
           MLSRV L SAAA  +P     A      +   R          P P      GKVR G I
Sbjct: 1   MLSRVVL-SAAATAAPSLKNAAFLGPGVLQATRTFHTGQPHLVPVPPLPEYGGKVRYGLI 59

Query: 233 PEEWFQFFHSKTGVTGPYTFGVGLTTYLFSKEIYVMEHEYYTGLSLLVMVIFATKKFGPQ 412
           PEE+FQF + KTGVTGPY  G GL  Y  SK IYV+  E +T LS+L ++++  KK+GP 
Sbjct: 60  PEEFFQFLYPKTGVTGPYVLGTGLILYALSKGIYVISAETFTALSVLGVMVYGIKKYGPF 119

Query: 413 LSAWLDK 433
           ++ + DK
Sbjct: 120 VADFADK 126


>AL390195-8|CAI15628.1|  195|Homo sapiens ATP synthase, H+
           transporting, mitochondrial F0 complex, subunit B1
           protein.
          Length = 195

 Score = 57.6 bits (133), Expect = 2e-08
 Identities = 25/58 (43%), Positives = 36/58 (62%)
 Frame = +2

Query: 260 SKTGVTGPYTFGVGLTTYLFSKEIYVMEHEYYTGLSLLVMVIFATKKFGPQLSAWLDK 433
           S     GPY  G GL  Y  SKEIYV+  E +T LS+L ++++  KK+GP ++ + DK
Sbjct: 8   SAAATAGPYVLGTGLILYALSKEIYVISAETFTALSVLGVMVYGIKKYGPFVADFADK 65


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 79,989,308
Number of Sequences: 237096
Number of extensions: 1761957
Number of successful extensions: 4164
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4013
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4164
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4423060356
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)