Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_I10
(522 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC622.19 |jmj4|mug149|Jmj4 protein|Schizosaccharomyces pombe|c... 32 0.045
SPAC4G9.04c |||cleavage and polyadenylation specificity factor |... 28 0.73
SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces pombe... 28 0.97
SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces pombe... 28 0.97
SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces pombe... 28 0.97
SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces pombe... 28 0.97
SPBC336.11 |||GARP complex subunit Vps52 |Schizosaccharomyces po... 26 3.9
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 6.8
SPAC1D4.02c |||human GRASP protein homolog |Schizosaccharomyces ... 25 6.8
SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase Ogm4|Schizo... 25 9.0
>SPCC622.19 |jmj4|mug149|Jmj4 protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 473
Score = 32.3 bits (70), Expect = 0.045
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = +1
Query: 451 VRLNNGDCLYLPSLWFHHVSQS 516
V L GD LYLP+ WFH V+ S
Sbjct: 378 VDLEPGDMLYLPASWFHEVTSS 399
>SPAC4G9.04c |||cleavage and polyadenylation specificity factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 638
Score = 28.3 bits (60), Expect = 0.73
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = +1
Query: 163 KHLRKIPRQILIVPSRYVQ*F*DDGASKEPSFPYTYIYDLMIFT*FL 303
KH++K P + P+ Y+ D SK PYTY + L +F+ F+
Sbjct: 46 KHIQKCPPNCKL-PALYLL----DSISKNLGAPYTYFFGLHLFSTFM 87
>SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 27.9 bits (59), Expect = 0.97
Identities = 17/64 (26%), Positives = 27/64 (42%)
Frame = -3
Query: 193 IFDAEFFVDAYRLLFLGFYRPFLIFFFDLLLMQSFSSNKNKRVIFLYSFVVF*VRYKLFK 14
+ E F+D LFLG Y ++L S S+ + FLY +F V F
Sbjct: 73 LIQKEEFIDVPNTLFLGCYTMGFQSCINMLCFLSSQSSPQGWINFLYILWIFSVAMSFFT 132
Query: 13 NYLV 2
+++
Sbjct: 133 AWVI 136
>SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 27.9 bits (59), Expect = 0.97
Identities = 17/64 (26%), Positives = 27/64 (42%)
Frame = -3
Query: 193 IFDAEFFVDAYRLLFLGFYRPFLIFFFDLLLMQSFSSNKNKRVIFLYSFVVF*VRYKLFK 14
+ E F+D LFLG Y ++L S S+ + FLY +F V F
Sbjct: 73 LIQKEEFIDVPNTLFLGCYTMGFQSCINMLCFLSSQSSPQGWINFLYILWIFSVAMSFFT 132
Query: 13 NYLV 2
+++
Sbjct: 133 AWVI 136
>SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 27.9 bits (59), Expect = 0.97
Identities = 17/64 (26%), Positives = 27/64 (42%)
Frame = -3
Query: 193 IFDAEFFVDAYRLLFLGFYRPFLIFFFDLLLMQSFSSNKNKRVIFLYSFVVF*VRYKLFK 14
+ E F+D LFLG Y ++L S S+ + FLY +F V F
Sbjct: 73 LIQKEEFIDVPNTLFLGCYTMGFQSCINMLCFLSSQSSPQGWINFLYILWIFSVAMSFFT 132
Query: 13 NYLV 2
+++
Sbjct: 133 AWVI 136
>SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 27.9 bits (59), Expect = 0.97
Identities = 17/64 (26%), Positives = 27/64 (42%)
Frame = -3
Query: 193 IFDAEFFVDAYRLLFLGFYRPFLIFFFDLLLMQSFSSNKNKRVIFLYSFVVF*VRYKLFK 14
+ E F+D LFLG Y ++L S S+ + FLY +F V F
Sbjct: 73 LIQKEEFIDVPNTLFLGCYTMGFQSCINMLCFLSSQSSPQGWINFLYILWIFSVAMSFFT 132
Query: 13 NYLV 2
+++
Sbjct: 133 AWVI 136
>SPBC336.11 |||GARP complex subunit Vps52 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 508
Score = 25.8 bits (54), Expect = 3.9
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = -1
Query: 468 AIIQAYFKLMSSFKLWIFAVVWSQWIWNIRRYI*KRLLFYLKCL-ILKVIVLTHK 307
A + YF L + +FA ++ + + R+YI + + C+ ILK I T K
Sbjct: 303 AFLLEYFNLSKDQQATVFAAIFEKTLHFSRKYITGLISSSIDCIGILKSIRFTQK 357
>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 230
Score = 25.0 bits (52), Expect = 6.8
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = -3
Query: 148 LGFYRPFLIFFFDLLLMQSFSSNKNKRVIFLYSFVVF 38
L +R L+FFF LL SFS + + F+V+
Sbjct: 110 LSLFRCLLLFFFFLLFFLSFSFSFSFLFFLSQIFIVY 146
>SPAC1D4.02c |||human GRASP protein homolog |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 345
Score = 25.0 bits (52), Expect = 6.8
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +1
Query: 133 VDRIQEIIAYKHLRKIPRQILIVPSRY 213
++R + Y H R RQ+ IVP+R+
Sbjct: 165 LNRPLRLYIYNHYRDSTRQVTIVPNRH 191
>SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase
Ogm4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 778
Score = 24.6 bits (51), Expect = 9.0
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = +1
Query: 364 FLNISSDIPDPLAPDYCKYPKFKRAHK 444
F + SD DP P Y K FK HK
Sbjct: 462 FQVVMSDNTDPQRPLYTKASSFKLIHK 488
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,033,681
Number of Sequences: 5004
Number of extensions: 41594
Number of successful extensions: 97
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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