Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_I10
         (522 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0558 - 18504639-18505718                                         42   2e-04
01_06_0878 - 32669790-32669846,32670206-32670299,32670384-326704...    36   0.026
02_04_0074 - 19474786-19474812,19475174-19475400,19476362-194764...    29   2.3  
11_06_0277 + 21843658-21845220,21846533-21846718,21847037-218471...    27   6.9  
05_07_0307 - 29111643-29112104,29112222-29113214                       27   6.9  
10_08_0182 + 15513693-15515273                                         27   9.1  

>09_04_0558 - 18504639-18505718
          Length = 359

 Score = 42.3 bits (95), Expect = 2e-04
 Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = +1

Query: 388 PDPLAPDYCKYPK-FKRAHKFKVRLNNGDCLYLPSLWFHHVSQSHG 522
           P+  A     +P  F+     +  +  G+ LYLPS+WFHHVSQS G
Sbjct: 263 PEEAAAQASSFPLYFEGPRPIRCTVRAGEMLYLPSMWFHHVSQSPG 308


>01_06_0878 -
           32669790-32669846,32670206-32670299,32670384-32670499,
           32670786-32671096,32672243-32672364,32672754-32672870,
           32672982-32673054,32673416-32673542,32673659-32673727,
           32673811-32674170,32674493-32674633
          Length = 528

 Score = 35.5 bits (78), Expect = 0.026
 Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
 Frame = +1

Query: 403 PDYCKYPK--FKRAHKFKVRLNNGDCLYLPSLWFHHV 507
           PDY +Y +  + + +  +V LN GD L++P  W+H V
Sbjct: 264 PDYSRYTRARYMKEYSERVILNCGDALFIPEGWYHQV 300


>02_04_0074 -
           19474786-19474812,19475174-19475400,19476362-19476496,
           19478662-19479193
          Length = 306

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 15/24 (62%), Positives = 18/24 (75%)
 Frame = -3

Query: 154 LFLGFYRPFLIFFFDLLLMQSFSS 83
           LF+ FY PFLIFF DLL M+  S+
Sbjct: 177 LFMLFY-PFLIFFCDLLRMKFISA 199


>11_06_0277 +
           21843658-21845220,21846533-21846718,21847037-21847165,
           21847256-21847415,21847846-21847955,21848038-21848247,
           21848473-21848730,21848810-21848885,21849217-21849350,
           21849928-21850007,21850265-21850316
          Length = 985

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 3/95 (3%)
 Frame = -3

Query: 283 LNHIYMYKENWVPLTLHHLKTTEHIGMGLL--IFDAEFFVDAY-RLLFLGFYRPFLIFFF 113
           L  I+++++  +P TLHHL   +H  + LL  IF A    + +   + LG  R     F 
Sbjct: 721 LRRIHIFRQ--IPHTLHHLSVRDHCVVCLLCEIFYARDHNENHTAAILLGNAR---TAFS 775

Query: 112 DLLLMQSFSSNKNKRVIFLYSFVVF*VRYKLFKNY 8
           D+L  ++F   +NK +      ++  + +   K+Y
Sbjct: 776 DILNDRNFDYKENKNIASEIISIIIEILHMSQKHY 810


>05_07_0307 - 29111643-29112104,29112222-29113214
          Length = 484

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 10/62 (16%)
 Frame = -3

Query: 274 IYM--YKENWVPLTLHHLKTTEHIGMG-----LLIFDAEFFV---DAYRLLFLGFYRPFL 125
           IYM  Y ++W P+ LHH  T + + M       +I D + F+   D Y+ +   + R +L
Sbjct: 187 IYMNEYSDSWSPIDLHHPSTFDTLAMDQKLKQSIIDDLDRFIKRKDYYKRIGKAWKRGYL 246

Query: 124 IF 119
           ++
Sbjct: 247 LY 248


>10_08_0182 + 15513693-15515273
          Length = 526

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
 Frame = -3

Query: 241 TLHHLKTTEHIGMGLLIFDAEFFVDAYRLLFLGFYRPFL--IFFFDL 107
           TL H +T  +  M ++I    FF DAY L  +      L  I++ DL
Sbjct: 11  TLDHARTQWYHFMAIVIAGMGFFTDAYDLFCISLVSKLLGRIYYTDL 57


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,659,197
Number of Sequences: 37544
Number of extensions: 216059
Number of successful extensions: 353
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 350
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 353
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)