Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_I10
         (522 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75526-3|CAA99769.1|  578|Caenorhabditis elegans Hypothetical pr...    33   0.16 
U97007-7|AAB52292.1|  441|Caenorhabditis elegans Hypothetical pr...    30   1.2  
U55370-1|AAA97993.3|  313|Caenorhabditis elegans Serpentine rece...    29   1.5  
Z47745-4|CAA87665.2|  445|Caenorhabditis elegans Hypothetical pr...    29   2.0  
AC006830-2|AAK68611.2|  293|Caenorhabditis elegans Serpentine re...    29   2.7  

>Z75526-3|CAA99769.1|  578|Caenorhabditis elegans Hypothetical
           protein C06H2.3 protein.
          Length = 578

 Score = 32.7 bits (71), Expect = 0.16
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +1

Query: 403 PDYCKYPKFKRAHKFKVRLNNGDCLYLPSLWFHHV 507
           PD   +P F++       +N GD +++P  W+H V
Sbjct: 530 PDLKIFPNFEQVEVLDAVINPGDAIFIPEKWWHFV 564


>U97007-7|AAB52292.1|  441|Caenorhabditis elegans Hypothetical
           protein ZC196.3 protein.
          Length = 441

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 12/31 (38%), Positives = 22/31 (70%)
 Frame = -3

Query: 391 LEYPKIYLKKAIVLPKMPNIKSNSVNS*ETK 299
           LE+PKI+LK  +V+ +  N+++  V + E+K
Sbjct: 407 LEFPKIHLKSYVVIHEQDNVQAEEVCTSESK 437


>U55370-1|AAA97993.3|  313|Caenorhabditis elegans Serpentine
           receptor, class x protein77 protein.
          Length = 313

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = -2

Query: 158 AIISWILSTLSHFFFRFTPYAEFFQ**KQKSNFSLFICCF 39
           A +  I +T   FFF F     FF   KQK++F+L +C F
Sbjct: 19  AAVLMITNTCIGFFFNFLIITSFFTDKKQKTSFNL-VCVF 57


>Z47745-4|CAA87665.2|  445|Caenorhabditis elegans Hypothetical
           protein T19H5.1 protein.
          Length = 445

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 17/36 (47%), Positives = 23/36 (63%)
 Frame = -3

Query: 157 LLFLGFYRPFLIFFFDLLLMQSFSSNKNKRVIFLYS 50
           +L LG +  FLI+ FD +  +S  SN NKRV+  YS
Sbjct: 45  MLLLGIW--FLIWSFDTVEKKSPVSNCNKRVVGYYS 78


>AC006830-2|AAK68611.2|  293|Caenorhabditis elegans Serpentine
           receptor, class sx protein40 protein.
          Length = 293

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 18/55 (32%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
 Frame = -3

Query: 175 FVDAYRLLFLGFYRPFLI-FFFDLLLMQSFSSNKNKRVIFLYSFVVF*VRYKLFK 14
           F  AY ++  GF   F+I FFF+L+ +     NKN + +F Y  ++  + ++LF+
Sbjct: 9   FKFAYIIVIYGFL--FIIGFFFNLIFLIIILKNKNLKSMF-YRLILVSIVFQLFQ 60


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,821,457
Number of Sequences: 27780
Number of extensions: 217079
Number of successful extensions: 482
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 475
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 482
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)