Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_I09
         (549 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    52   6e-08
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo...    27   2.4  
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    27   2.4  
SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces...    26   4.2  

>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 52.0 bits (119), Expect = 6e-08
 Identities = 29/94 (30%), Positives = 46/94 (48%), Gaps = 2/94 (2%)
 Frame = +2

Query: 269 SINGYQDLMQGPLQTYLALSKQIGGDVVTHSNLVNAAFQAQLRYIQLASTQAKPSPANE- 445
           SI+ Y +     L  Y+ LSK+IGG +   S  V  AF    + + +A    KP   +  
Sbjct: 105 SISAYDEFCSKYLSKYMELSKKIGGLIAEQSEHVEKAFNLLRQVLSVALKAQKPDMDSPE 164

Query: 446 -MQLLAPTSDQITAIQQYREKNRASPYFNHLSAV 544
            ++ L P   ++  I   R+++R +P FN LS V
Sbjct: 165 LLEFLKPIQSELLTITNIRDEHRTAPEFNQLSTV 198


>SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1616

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +3

Query: 291  SCRVPCKRIWRCPSKSEVMWSRIPTW 368
            S  VP +  +RCP  S V  S +P W
Sbjct: 1335 SLLVPMRLKYRCPKASRVNQSTLPIW 1360


>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 22/85 (25%), Positives = 34/85 (40%)
 Frame = +2

Query: 269 SINGYQDLMQGPLQTYLALSKQIGGDVVTHSNLVNAAFQAQLRYIQLASTQAKPSPANEM 448
           S+   Q  +Q P    +A        +V    ++      QL    +A+T A P    ++
Sbjct: 78  SLGPAQQNIQQPPSVSIASQPHYAEAIVPIQQVLQPQQYRQLPPNMVAATNA-PQQHPQL 136

Query: 449 QLLAPTSDQITAIQQYREKNRASPY 523
           Q + P       IQQ    N+ASPY
Sbjct: 137 QRMMPILSSNQPIQQLPLPNQASPY 161


>SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 967

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +2

Query: 47  DAGNEVDFTAALHNPASDLETLVERLEK 130
           + GN  +   ALHN +S LE++ ERL K
Sbjct: 170 ETGNSTN--TALHNVSSPLESVSERLSK 195


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,079,799
Number of Sequences: 5004
Number of extensions: 37992
Number of successful extensions: 112
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)