Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_I09
(549 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0954 - 29113938-29114024,29114277-29114444,29115156-291152... 38 0.004
08_01_0321 + 2872609-2873027,2873477-2873905,2874743-2874944,287... 37 0.012
08_01_0601 - 5268520-5271112,5272448-5272950 31 0.80
07_01_0863 + 7177443-7177471,7178300-7178399,7178628-7178899,717... 28 4.3
11_01_0779 + 6518556-6518601,6519825-6519967,6520091-6520114,652... 28 5.6
01_01_1043 + 8228201-8228209,8228364-8228439,8228527-8228903 28 5.6
09_04_0700 + 19582401-19582472,19582559-19582657 27 7.5
01_01_0702 + 5423059-5423571 27 7.5
>03_05_0954 -
29113938-29114024,29114277-29114444,29115156-29115212,
29115314-29115369,29115463-29115572,29116142-29116310,
29116418-29116742,29117378-29117442,29117541-29117712,
29118191-29118484
Length = 500
Score = 38.3 bits (85), Expect = 0.004
Identities = 25/94 (26%), Positives = 42/94 (44%), Gaps = 1/94 (1%)
Frame = +2
Query: 269 SINGYQDLMQGPLQTYLALSKQIGGDVVTHSNLVNAAFQAQL-RYIQLASTQAKPSPANE 445
+I Y + + G + A +++IGG V+ + ++ AF R +Q Q S A+
Sbjct: 47 AIVAYDEFVAGAVGRLTAAAEKIGGKVLDATKVLAEAFAVSKDRLVQAKQLQKPASMADA 106
Query: 446 MQLLAPTSDQITAIQQYREKNRASPYFNHLSAVS 547
P +D I E R YFNH+ +V+
Sbjct: 107 QDFFKPLNDVIAKAIAMTEGRRPD-YFNHIKSVA 139
>08_01_0321 + 2872609-2873027,2873477-2873905,2874743-2874944,
2875909-2875947,2876309-2876354,2877380-2877922,
2878827-2880847,2880972-2881215,2881642-2881684,
2881923-2881962,2883580-2883675,2883712-2883759,
2883964-2884290
Length = 1498
Score = 36.7 bits (81), Expect = 0.012
Identities = 21/53 (39%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = +1
Query: 97 GSRDVGRTS*KS-DVSIGAATALACALSDVDVFACTVASFSPSNPISRTHRVY 252
G D GRTS KS D I ALA + + +V A P+ P+ RT R Y
Sbjct: 1170 GFNDFGRTSLKSVDARIHCKDALAAEVQEAEVALANAAHGHPNRPVLRTDRAY 1222
>08_01_0601 - 5268520-5271112,5272448-5272950
Length = 1031
Score = 30.7 bits (66), Expect = 0.80
Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = +3
Query: 240 PSSILRLTT*-ALMVTKTSCRVPCKRIWRCPSKSEVMWSRIPTWS 371
PSS+ RL L V++T R+WR PS VM R+ WS
Sbjct: 701 PSSVKRLRNLQTLDVSRTDVEALPWRLWRNPSLRHVMARRLAAWS 745
>07_01_0863 +
7177443-7177471,7178300-7178399,7178628-7178899,
7179143-7179794,7179886-7180085,7180317-7180417,
7180559-7181697
Length = 830
Score = 28.3 bits (60), Expect = 4.3
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +3
Query: 330 SKSEVMWSRIPTWSTQLSRLNFATF 404
S S++MWSR+ W + RL F
Sbjct: 64 SASDIMWSRVEGWKDSMDRLALIPF 88
>11_01_0779 +
6518556-6518601,6519825-6519967,6520091-6520114,
6520140-6520286,6521957-6522142,6522232-6522490,
6522738-6522969,6523081-6523231,6523322-6523499,
6523916-6524191,6524414-6524642,6524754-6524904,
6525013-6525192
Length = 733
Score = 27.9 bits (59), Expect = 5.6
Identities = 14/51 (27%), Positives = 26/51 (50%)
Frame = -2
Query: 239 VLDMGLLGLKLATVQANTSTSESAHARAVAAPIETSLFQDVRPTSRDPMLD 87
+ +G+L L++ T N STS+ +R + + + + TSR P L+
Sbjct: 365 IFSLGILILEIVTGLKNDSTSQEVSSRILIDNVRRKWLKSSQITSRYPSLE 415
>01_01_1043 + 8228201-8228209,8228364-8228439,8228527-8228903
Length = 153
Score = 27.9 bits (59), Expect = 5.6
Identities = 13/47 (27%), Positives = 22/47 (46%)
Frame = +1
Query: 109 VGRTS*KSDVSIGAATALACALSDVDVFACTVASFSPSNPISRTHRV 249
+GR+ K D+ +T D+D CT+ P +P+ HR+
Sbjct: 12 IGRSC-KKDILHAVSTLQGIKSMDIDEEKCTLTVLGPVDPVKIVHRL 57
>09_04_0700 + 19582401-19582472,19582559-19582657
Length = 56
Score = 27.5 bits (58), Expect = 7.5
Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Frame = -2
Query: 272 CSCCQS*YTRWVLDMGLLGLKLATVQANTS--TSESAHARAVAAPIETSLFQD 120
C C+S R +LD+ LL K TVQ S T + A P S+F+D
Sbjct: 4 CGPCKSPAIRLLLDLSLLHEKNYTVQYRYSQRTRTYPYEHTHANPTSMSIFED 56
>01_01_0702 + 5423059-5423571
Length = 170
Score = 27.5 bits (58), Expect = 7.5
Identities = 24/75 (32%), Positives = 33/75 (44%)
Frame = -1
Query: 258 VVIYSMGS*YGVARAEAGDGAGEHVDV*ECARKSGSCSNRDVTFSRRSTNVSRSDAGLCN 79
++I S GS G AR + G G E V C + C+ + R+ GLC+
Sbjct: 5 IIIKSSGSGSGDARHDDGGGEVETVRC-ACCGVAEECTAAYIG-GVRAAFCGDWLCGLCS 62
Query: 78 AAVKSTSLPASAPTG 34
AVK T+ AP G
Sbjct: 63 EAVKETARRDPAPGG 77
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,412,160
Number of Sequences: 37544
Number of extensions: 285509
Number of successful extensions: 846
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 829
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 846
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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