Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_I09
         (549 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006638-1|AAK85482.1|  495|Caenorhabditis elegans Cyclase assoc...    60   1e-09
AC006638-2|AAK85481.1| 1256|Caenorhabditis elegans Cyclase assoc...    58   3e-09
AF000265-4|AAK68198.1|  457|Caenorhabditis elegans Hypothetical ...    45   3e-05
Z68227-7|CAA92520.1|  305|Caenorhabditis elegans Hypothetical pr...    28   3.9  
AY551965-1|AAS65429.1| 2395|Caenorhabditis elegans Swi/Snf famil...    27   8.9  
AL132904-26|CAC35851.3| 2395|Caenorhabditis elegans Hypothetical...    27   8.9  

>AC006638-1|AAK85482.1|  495|Caenorhabditis elegans Cyclase
           associated protein homologprotein 1, isoform b protein.
          Length = 495

 Score = 60.1 bits (139), Expect = 1e-09
 Identities = 41/155 (26%), Positives = 70/155 (45%), Gaps = 4/155 (2%)
 Frame = +2

Query: 95  SDLETLVERLEKVTSRLE----QLPLLRAHSQXXXXXXXXXXXXXXXXXYQEPIEYITTD 262
           S  E  ++RLE VTSRLE    Q P L A                     + P       
Sbjct: 2   STQEDFLKRLESVTSRLEAIAGQKPAL-APKPTNLGGPSASAAASAGDSGEVPAH----- 55

Query: 263 NMSINGYQDLMQGPLQTYLALSKQIGGDVVTHSNLVNAAFQAQLRYIQLASTQAKPSPAN 442
              +  Y D ++ PL  +  L+ Q+GGD+      V A F +   Y+  A+ +++PS   
Sbjct: 56  ---VRAYDDAIEEPLANWSKLTDQLGGDLAAVKPKVLAMFASMRNYLWSAAGKSEPSAEE 112

Query: 443 EMQLLAPTSDQITAIQQYREKNRASPYFNHLSAVS 547
             ++L P  + +  I  +++  R +P++NHL++V+
Sbjct: 113 AQKMLTPVINLLGEINNFKDTKRKTPHWNHLNSVA 147


>AC006638-2|AAK85481.1| 1256|Caenorhabditis elegans Cyclase associated
            protein homologprotein 1, isoform a protein.
          Length = 1256

 Score = 58.4 bits (135), Expect = 3e-09
 Identities = 25/92 (27%), Positives = 51/92 (55%)
 Frame = +2

Query: 272  INGYQDLMQGPLQTYLALSKQIGGDVVTHSNLVNAAFQAQLRYIQLASTQAKPSPANEMQ 451
            +  Y D ++ PL  +  L+ Q+GGD+      V A F +   Y+  A+ +++PS     +
Sbjct: 817  VRAYDDAIEEPLANWSKLTDQLGGDLAAVKPKVLAMFASMRNYLWSAAGKSEPSAEEAQK 876

Query: 452  LLAPTSDQITAIQQYREKNRASPYFNHLSAVS 547
            +L P  + +  I  +++  R +P++NHL++V+
Sbjct: 877  MLTPVINLLGEINNFKDTKRKTPHWNHLNSVA 908


>AF000265-4|AAK68198.1|  457|Caenorhabditis elegans Hypothetical
           protein C18E3.6 protein.
          Length = 457

 Score = 45.2 bits (102), Expect = 3e-05
 Identities = 25/88 (28%), Positives = 43/88 (48%)
 Frame = +2

Query: 272 INGYQDLMQGPLQTYLALSKQIGGDVVTHSNLVNAAFQAQLRYIQLASTQAKPSPANEMQ 451
           IN Y D +   L ++  LS +IGGD+     +  + F     ++ +A  + K        
Sbjct: 39  INLYDDAICENLVSFYDLSAKIGGDLNRLGCMTRSLFFTHRYFLWIACGRKKADNDEFAT 98

Query: 452 LLAPTSDQITAIQQYREKNRASPYFNHL 535
           L+   S +I A   ++EKNR S ++NH+
Sbjct: 99  LVNDLSKEIVAFSDFKEKNRKSEFYNHI 126


>Z68227-7|CAA92520.1|  305|Caenorhabditis elegans Hypothetical
           protein F49C12.9 protein.
          Length = 305

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 19/43 (44%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = +2

Query: 317 LALSKQIGG-DVVTHSNLVNAAFQAQLRYIQLASTQAKPSPAN 442
           LA  + IGG   VTH+ L N A QA L  I +      P+PAN
Sbjct: 207 LAAQRPIGGAQPVTHALLQN-ALQAALANIAVPPANRVPAPAN 248


>AY551965-1|AAS65429.1| 2395|Caenorhabditis elegans Swi/Snf family
            ATPase protein.
          Length = 2395

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 14/36 (38%), Positives = 23/36 (63%)
 Frame = +2

Query: 344  DVVTHSNLVNAAFQAQLRYIQLASTQAKPSPANEMQ 451
            D+VT S+    A++A  + + LAS Q KPSP  +++
Sbjct: 1888 DIVTMSDESIVAYEASKKKL-LASRQTKPSPRQDVR 1922


>AL132904-26|CAC35851.3| 2395|Caenorhabditis elegans Hypothetical
            protein Y111B2A.22 protein.
          Length = 2395

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 14/36 (38%), Positives = 23/36 (63%)
 Frame = +2

Query: 344  DVVTHSNLVNAAFQAQLRYIQLASTQAKPSPANEMQ 451
            D+VT S+    A++A  + + LAS Q KPSP  +++
Sbjct: 1888 DIVTMSDESIVAYEASKKKL-LASRQTKPSPRQDVR 1922


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,720,853
Number of Sequences: 27780
Number of extensions: 223407
Number of successful extensions: 709
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 658
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 709
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)