Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_I08
(559 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAP8A3.09c |paa1||protein phosphatase regulatory subunit Paa1|S... 155 5e-39
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos... 41 1e-04
SPAC2F3.06c |kap104||karyopherin Kap104|Schizosaccharomyces pomb... 29 0.61
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch... 28 1.1
SPBC725.08 |||transcription factor |Schizosaccharomyces pombe|ch... 27 1.4
SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein Sap155|Sc... 27 1.9
SPAC144.09c |sfc2||RNA polymerase III transcription factor TFIII... 27 1.9
SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces pom... 27 2.5
SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein 5|... 26 3.3
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 26 4.3
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz... 25 5.7
SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalyt... 25 7.5
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac... 25 7.5
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha... 25 7.5
SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr 2|||M... 25 7.5
SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar ... 25 7.5
SPBC1703.15c |vps33|SPBC2A9.01c|vacuolar sorting protein Vps33|S... 25 7.5
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ... 25 10.0
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|... 25 10.0
SPCC320.11c ||SPCC330.18|RNA-binding protein|Schizosaccharomyces... 25 10.0
SPCC74.02c |||mRNA cleavage and polyadenylation specificity fact... 25 10.0
>SPAP8A3.09c |paa1||protein phosphatase regulatory subunit
Paa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 590
Score = 155 bits (375), Expect = 5e-39
Identities = 83/184 (45%), Positives = 115/184 (62%), Gaps = 1/184 (0%)
Frame = +1
Query: 10 DDQDSVRXXXXXXXXXXXXXXPPE-DMEQLVMPTVRARAGDTSWRVRYMVADKFVELQQA 186
DDQDSVR + ++ ++ +R+ D+SWR RYMVA FV+L +
Sbjct: 216 DDQDSVRLLSFDIMVSLAEVLKSDSEIRHYLLQPLRSFVSDSSWRTRYMVAANFVKLAKV 275
Query: 187 VGPELARSDLAQIFQALLKDTEAEVRAAAAGKVKDFCMNLDKAHQEHIIMTMILPQIKDL 366
VGP L + +L + F L+KDTE EVR A A ++ FC LDK I++ I+P I++L
Sbjct: 276 VGPSLIKDELIKPFVLLMKDTEQEVRRAIATQIPGFCELLDK----RIVLEEIIPVIQEL 331
Query: 367 VCDANQHVKSALASVIMGLSPIVGRQNTIEHLLPLFLTQLKDECPEVRLNIISNLECVNE 546
+ D QHV++AL I L+P +G++ T E+LLP+FL LKDE PEVRLNIIS LE VN+
Sbjct: 332 INDPAQHVRAALGMNIGALAPQLGKEKTTEYLLPMFLELLKDENPEVRLNIISKLEVVNK 391
Query: 547 VIGI 558
V+GI
Sbjct: 392 VVGI 395
Score = 49.6 bits (113), Expect = 3e-07
Identities = 37/157 (23%), Positives = 69/157 (43%)
Frame = +1
Query: 88 EQLVMPTVRARAGDTSWRVRYMVADKFVELQQAVGPELARSDLAQIFQALLKDTEAEVRA 267
++L+ P V DT VR +A + + + + ++ + Q L+ D VRA
Sbjct: 283 DELIKPFVLLMK-DTEQEVRRAIATQIPGFCELLDKRIVLEEIIPVIQELINDPAQHVRA 341
Query: 268 AAAGKVKDFCMNLDKAHQEHIIMTMILPQIKDLVCDANQHVKSALASVIMGLSPIVGRQN 447
A + L K ++ M L +KD N V+ + S + ++ +VG +
Sbjct: 342 ALGMNIGALAPQLGKEKTTEYLLPMFLELLKD----ENPEVRLNIISKLEVVNKVVGIEL 397
Query: 448 TIEHLLPLFLTQLKDECPEVRLNIISNLECVNEVIGI 558
+ LLP +T +D+ VRL II + + + +G+
Sbjct: 398 LSQSLLPAIVTLAEDKQWRVRLAIIDYIPLLAQQLGV 434
Score = 46.4 bits (105), Expect = 3e-06
Identities = 33/158 (20%), Positives = 62/158 (39%)
Frame = +1
Query: 79 EDMEQLVMPTVRARAGDTSWRVRYMVADKFVELQQAVGPELARSDLAQIFQALLKDTEAE 258
E + Q ++P + A D WRVR + D L Q +G E + + + L+D
Sbjct: 396 ELLSQSLLPAIVTLAEDKQWRVRLAIIDYIPLLAQQLGVEFFNEKMGNLCMSWLEDHVYS 455
Query: 259 VRAAAAGKVKDFCMNLDKAHQEHIIMTMILPQIKDLVCDANQHVKSALASVIMGLSPIVG 438
+R AA ++ L + I+P+ + N + I ++P +
Sbjct: 456 IREAAIKNLR----KLTEIFGLEWATETIIPKFLAMRSHPNYLYRMTTIFAISEIAPALN 511
Query: 439 RQNTIEHLLPLFLTQLKDECPEVRLNIISNLECVNEVI 552
+ + +LP + D P +R N+ E + V+
Sbjct: 512 AEVIEKQILPTLEQLVNDPIPNIRFNVAKAFEVLKPVL 549
Score = 27.5 bits (58), Expect = 1.4
Identities = 30/135 (22%), Positives = 55/135 (40%), Gaps = 1/135 (0%)
Frame = +1
Query: 151 MVADKFVELQQAVGPELARSDLAQIFQALLKD-TEAEVRAAAAGKVKDFCMNLDKAHQEH 327
+V DK V+ V L++ L Q F L++ + AE + A +C ++ +
Sbjct: 103 VVRDKAVDSLNKVCICLSQEQLEQYFVPLVQRLSTAEWFTSRASSAGLYCAAYSQS-ENP 161
Query: 328 IIMTMILPQIKDLVCDANQHVKSALASVIMGLSPIVGRQNTIEHLLPLFLTQLKDECPEV 507
+ + L D V+ A+ +V +Q I+ +PLF + D+ V
Sbjct: 162 AVKVSLRQSFSHLCHDEAPMVRRPAATNCAKFVFLVTKQEAIDEFIPLFNSLSNDDQDSV 221
Query: 508 RLNIISNLECVNEVI 552
RL + + EV+
Sbjct: 222 RLLSFDIMVSLAEVL 236
>SPBC119.07 |ppk19||serine/threonine protein kinase
Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1706
Score = 40.7 bits (91), Expect = 1e-04
Identities = 26/105 (24%), Positives = 51/105 (48%)
Frame = +1
Query: 235 LLKDTEAEVRAAAAGKVKDFCMNLDKAHQEHIIMTMILPQIKDLVCDANQHVKSALASVI 414
LL D+ + VR + + C+ KA +I++ ++ + D + ++ A I
Sbjct: 600 LLADSSSIVRRSLLNALAPLCVFFGKAKSNDLILSHLITYLND----TDWMLRCAFFESI 655
Query: 415 MGLSPIVGRQNTIEHLLPLFLTQLKDECPEVRLNIISNLECVNEV 549
GLS +G ++ E++LPL L L D P V +++ + + E+
Sbjct: 656 TGLSIFIGPRSVDEYILPLMLQALVDPEPAVLESVLGSFSGLIEL 700
Score = 29.9 bits (64), Expect = 0.27
Identities = 24/107 (22%), Positives = 42/107 (39%)
Frame = +1
Query: 94 LVMPTVRARAGDTSWRVRYMVADKFVELQQAVGPELARSDLAQIFQALLKDTEAEVRAAA 273
L++ + DT W +R + L +GP + + L D E V +
Sbjct: 631 LILSHLITYLNDTDWMLRCAFFESITGLSIFIGPRSVDEYILPLMLQALVDPEPAVLESV 690
Query: 274 AGKVKDFCMNLDKAHQEHIIMTMILPQIKDLVCDANQHVKSALASVI 414
G F ++ E +++ IL + LV N +++ A SVI
Sbjct: 691 LG---SFSGLIELHLFEKLVVVDILQLVLPLVAVPNAYIRRAALSVI 734
Score = 26.6 bits (56), Expect = 2.5
Identities = 18/75 (24%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Frame = +1
Query: 340 MILPQIKDLVCDAN-QHVKSALASVIMGLSPIVGRQNTIEHLLPLFLTQLKDECPEVRLN 516
++LP + + N + K S++ LS + ++ ++ +LP +T L+D+ +VR++
Sbjct: 431 VLLPIVLSTIRHVNTRESKINALSLVQILSRNICDESKLDTVLPFVMTLLRDQYADVRIS 490
Query: 517 -IISNLECVNEVIGI 558
+I+ V+ V I
Sbjct: 491 ALITITRLVSNVTSI 505
>SPAC2F3.06c |kap104||karyopherin Kap104|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 910
Score = 28.7 bits (61), Expect = 0.61
Identities = 23/68 (33%), Positives = 29/68 (42%), Gaps = 2/68 (2%)
Frame = +1
Query: 103 PTVRARAGDTSWRVRYMVADKFVELQQAVGPELARSD--LAQIFQALLKDTEAEVRAAAA 276
PTV D +V+ L V P LA++D L QI KD EVR +A
Sbjct: 651 PTVDVPDRDFLVTTLDLVSGIIQALGSQVSPLLAQADPPLGQIIGICAKDEVPEVRQSAY 710
Query: 277 GKVKDFCM 300
+ D CM
Sbjct: 711 ALLGDMCM 718
>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
Y|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1002
Score = 27.9 bits (59), Expect = 1.1
Identities = 15/38 (39%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Frame = +3
Query: 411 HYGPQP-HRRPTEHNRAPPASVPDTIERRMP*GPFEHH 521
H P P H P EH PP + MP PF+HH
Sbjct: 310 HMPPPPMHHEPGEH--MPPPPMHHEPGEHMPPPPFKHH 345
>SPBC725.08 |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 609
Score = 27.5 bits (58), Expect = 1.4
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = -2
Query: 252 LRILQQSLEYLGQIGTSQFWTNSLLQFNKLVGNHVPDAPGGVS 124
+R+ EYL Q+ T FWT+ ++ L+ + D+P G S
Sbjct: 371 IRLSDLYAEYLRQVATFDFWTSK--EYESLIA-LLQDSPAGYS 410
Score = 24.6 bits (51), Expect = 10.0
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +1
Query: 208 SDLAQIFQALLKDTEAEVRAAAAGKVKDFCMN 303
SDL F LL+ +++A A V+DF N
Sbjct: 429 SDLENNFACLLEPENVDIKAKGALPVEDFINN 460
>SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein
Sap155|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1188
Score = 27.1 bits (57), Expect = 1.9
Identities = 19/75 (25%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
Frame = +1
Query: 343 ILPQIKDLVCDANQHVKSALASVIMGLS---PIVGRQNTIEHLLPLFLTQLKDECPEVRL 513
I P + D + D + + ASVI LS +G ++ + HLL + + +E P V
Sbjct: 1053 ITPLLADALMDRDAVHRQTAASVIKHLSLGCVGLGVEDAMIHLLNILWPNILEESPHVIN 1112
Query: 514 NIISNLECVNEVIGI 558
+ ++ + IG+
Sbjct: 1113 AVREGIDGIRNCIGV 1127
>SPAC144.09c |sfc2||RNA polymerase III transcription factor
TFIIIA|Schizosaccharomyces pombe|chr 1|||Manual
Length = 374
Score = 27.1 bits (57), Expect = 1.9
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Frame = -2
Query: 249 RILQQSLEYLGQIGTSQFWTNSLLQFNKLVGNHVPDAP--GGVSGTSSHRRHHQLLHVLG 76
+I+ S + +G F S LQ N + HVP G T++H RHH +LH
Sbjct: 171 KIISYSCPHESCVGHEGFEKWSQLQ-NHIREAHVPSCSICGRQFKTAAHLRHHVVLHQTT 229
Query: 75 RQESR 61
+E +
Sbjct: 230 LEERK 234
>SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1067
Score = 26.6 bits (56), Expect = 2.5
Identities = 26/96 (27%), Positives = 50/96 (52%), Gaps = 4/96 (4%)
Frame = +1
Query: 211 DLAQIFQALLKDTEAEVRAAAAGKVKDFC-MNLDKAHQEHIIMTMILPQIKDLVCDANQH 387
D+ +F A L+D+E EVR+ AA + C + + E++ IL +++ +
Sbjct: 894 DVFSLFMAALEDSEGEVRSNAAYSMGLLCQFSTEDLSSEYL---NILQKLQPFF--TQEV 948
Query: 388 VKSALASVIMGLSP-IVGRQNTI--EHLLPLFLTQL 486
++AL + I +S I+ QN I + +LP+ ++L
Sbjct: 949 FRTALDNAIGCISRLILHNQNAIPVDQVLPIVFSKL 984
>SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein
5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 736
Score = 26.2 bits (55), Expect = 3.3
Identities = 15/57 (26%), Positives = 25/57 (43%)
Frame = -3
Query: 302 FMQKSLTFPAAAARTSASVSFSRAWNIWAKSERASSGPTACCNSTNLSATMYRTRQE 132
FM+ L + +S S S+ WN + + S T +L+A Y+T+ E
Sbjct: 135 FMESELQTKLSTINSSPFKSLSQYWNAAYNKKESISSSTNSNIKLHLAARKYQTKPE 191
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 25.8 bits (54), Expect = 4.3
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = -1
Query: 64 PPPQRTPRRPADAQ 23
PPPQ TP + ADA+
Sbjct: 177 PPPQETPTKSADAE 190
>SPAC22E12.11c |set3||histone lysine methyltransferase
Set3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 859
Score = 25.4 bits (53), Expect = 5.7
Identities = 18/66 (27%), Positives = 26/66 (39%)
Frame = -3
Query: 311 LSRFMQKSLTFPAAAARTSASVSFSRAWNIWAKSERASSGPTACCNSTNLSATMYRTRQE 132
LS + L+F A++ + FSR + RAS+ LS T T
Sbjct: 364 LSEVLSTFLSFNECASQDKKNCVFSRVTKYIKAARRASTANRVSVAKDRLSLTPSSTPST 423
Query: 131 VSPARA 114
SPA +
Sbjct: 424 PSPAES 429
>SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalytic
subunit Pka1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 512
Score = 25.0 bits (52), Expect = 7.5
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = -2
Query: 171 NKLVGNHVPDAPGGVSGTSSHRRH-HQLLHVLGRQESRHRSARLGGQQTH 25
+ L+ + +P++ S SSH+RH LG + RSA G + H
Sbjct: 119 DNLIPSPLPESASRSSSQSSHQRHSRDGRGELGSEHGERRSAMDGLRDRH 168
>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
Smc6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1140
Score = 25.0 bits (52), Expect = 7.5
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = +1
Query: 286 KDFCMNLDKAHQEHIIMTMILPQIKDLVCDANQHVKSALASVIMGLS 426
++F L HQE + + P ++L N+H KS ++ + GLS
Sbjct: 1001 RNFTGKLVIKHQEEFLEPRVYPANRNLATAHNRHEKSKVS--VQGLS 1045
>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 884
Score = 25.0 bits (52), Expect = 7.5
Identities = 13/42 (30%), Positives = 16/42 (38%)
Frame = +3
Query: 393 IGPRFRHYGPQPHRRPTEHNRAPPASVPDTIERRMP*GPFEH 518
I P+ P P P + PP V +I MP P H
Sbjct: 723 IKPQVTPAPPTPAPTPAVKHHPPPPPVRSSISPSMPPAPLTH 764
>SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 685
Score = 25.0 bits (52), Expect = 7.5
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = +1
Query: 331 IMTMILPQIKDLVCDANQHVKSALASVIMGLSP 429
I T+ + I+ L D H KS MGL+P
Sbjct: 9 IDTLAINTIRTLAVDTTAHAKSGHPGAPMGLAP 41
>SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar
membrane transporter Hmt1|Schizosaccharomyces pombe|chr
3|||Manual
Length = 830
Score = 25.0 bits (52), Expect = 7.5
Identities = 9/29 (31%), Positives = 14/29 (48%)
Frame = +2
Query: 11 MIKILCVCWPPRRALRWRLSCRPRTWSSW 97
+I LC C+ + WR R + +SW
Sbjct: 412 LIMTLCYCYVTVKITSWRTEARRKMVNSW 440
>SPBC1703.15c |vps33|SPBC2A9.01c|vacuolar sorting protein
Vps33|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 25.0 bits (52), Expect = 7.5
Identities = 16/61 (26%), Positives = 27/61 (44%)
Frame = +1
Query: 214 LAQIFQALLKDTEAEVRAAAAGKVKDFCMNLDKAHQEHIIMTMILPQIKDLVCDANQHVK 393
L++I + L D E +A +++DF L EH + + + LV QH K
Sbjct: 294 LSKIARKLSSDFEGRRQAKTVNQIRDFVSKLGSLQSEHTSLNIHTGLAETLV----QHTK 349
Query: 394 S 396
+
Sbjct: 350 N 350
>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1854
Score = 24.6 bits (51), Expect = 10.0
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
Frame = -2
Query: 285 NLPGSGGAD---LGLRILQQSLEYLGQIGTSQFWTNSLLQFN-KLVGNHVPDAPG 133
+LP G +D + +S Y+ QI TS+ WT+ + +L H+ PG
Sbjct: 667 DLPNDGDSDDDAISFATTYESFLYMYQILTSENWTDVMFAIQARLAHLHLSWIPG 721
>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
Prp16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 24.6 bits (51), Expect = 10.0
Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Frame = -2
Query: 243 LQQSLEYLGQIGTSQFWTNSLLQFNKLVGNHVPDAPGGVSGTS--SHRRHHQLLHVL 79
+++ ++L + +F NS+ + N+++ + V APG S S RR H L+ L
Sbjct: 323 IEKQKKHLSIEASDRFKENSMWEKNRMITSGVSKAPGLESDYSLMEERRVHLLVDEL 379
>SPCC320.11c ||SPCC330.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 180
Score = 24.6 bits (51), Expect = 10.0
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = -2
Query: 234 SLEYLGQIGTSQFWTNSLLQFNKLVGNHVPDAPGG 130
+L+Y+ Q + W S + L GNHV A G
Sbjct: 85 ALDYIAQYARYKIWVKSNGEMPFLYGNHVLKAHVG 119
>SPCC74.02c |||mRNA cleavage and polyadenylation specificity factor
complex associated protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 710
Score = 24.6 bits (51), Expect = 10.0
Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +1
Query: 388 VKSALASVIMGLSPIVGRQNTI-EHLLPLFLTQLKDECPEVRLNIISNL 531
+KS I P+ + T+ E L P+ + Q EC + +N++SN+
Sbjct: 177 LKSKSRQKISSSDPLEDLRLTLTECLNPINIVQAPKECAAILVNLMSNI 225
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,255,476
Number of Sequences: 5004
Number of extensions: 45431
Number of successful extensions: 170
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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