Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_I07
         (409 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CU457741-15|CAM36357.1|  110|Caenorhabditis elegans Hypothetical...   119   9e-28
Z29095-12|CAB54287.2|  414|Caenorhabditis elegans Hypothetical p...    30   0.56 
Z29095-11|CAB54286.2|  426|Caenorhabditis elegans Hypothetical p...    30   0.56 
U97016-4|AAN84886.1| 2692|Caenorhabditis elegans Lethal protein ...    28   2.3  
U97016-3|AAN84885.1| 2695|Caenorhabditis elegans Lethal protein ...    28   2.3  
AC006712-11|AAK39327.2|  308|Caenorhabditis elegans Hypothetical...    27   3.9  
Z75710-2|CAB00025.2|  381|Caenorhabditis elegans Hypothetical pr...    27   6.9  
U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily ass...    27   6.9  
Z81479-8|CAB03946.1| 1181|Caenorhabditis elegans Hypothetical pr...    26   9.1  
Z70718-5|CAA94670.1|  197|Caenorhabditis elegans Hypothetical pr...    26   9.1  
AC025727-10|AAK66029.1|  707|Caenorhabditis elegans Hypothetical...    26   9.1  

>CU457741-15|CAM36357.1|  110|Caenorhabditis elegans Hypothetical
           protein C42C1.14 protein.
          Length = 110

 Score =  119 bits (286), Expect = 9e-28
 Identities = 57/97 (58%), Positives = 70/97 (72%)
 Frame = +2

Query: 11  LTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPARPAERSR 190
           +T+RRRLSYNT SN++R+V+TPGGRLV QY+KK  +IP+C     KL GI PARP     
Sbjct: 5   VTYRRRLSYNTTSNKKRLVKTPGGRLVVQYIKKRGQIPKCRDTGVKLHGITPARPIALRL 64

Query: 191 LCYRKKTVKRVYGGVLCHKCVKQRIVRAFLIEEQKIV 301
           L   ++TV R YGG L    VK+RI RAFL+EEQKIV
Sbjct: 65  LKRNERTVTRAYGGCLSPNAVKERITRAFLVEEQKIV 101


>Z29095-12|CAB54287.2|  414|Caenorhabditis elegans Hypothetical
           protein R10E11.3b protein.
          Length = 414

 Score = 30.3 bits (65), Expect = 0.56
 Identities = 14/24 (58%), Positives = 17/24 (70%)
 Frame = -1

Query: 244 VTENTSINALHCLLAVAETRTLCG 173
           V +NTSI+  HCL   +ET TLCG
Sbjct: 219 VEQNTSIS--HCLRVFSETETLCG 240


>Z29095-11|CAB54286.2|  426|Caenorhabditis elegans Hypothetical
           protein R10E11.3a protein.
          Length = 426

 Score = 30.3 bits (65), Expect = 0.56
 Identities = 14/24 (58%), Positives = 17/24 (70%)
 Frame = -1

Query: 244 VTENTSINALHCLLAVAETRTLCG 173
           V +NTSI+  HCL   +ET TLCG
Sbjct: 231 VEQNTSIS--HCLRVFSETETLCG 252


>U97016-4|AAN84886.1| 2692|Caenorhabditis elegans Lethal protein 363,
            isoform b protein.
          Length = 2692

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 17/60 (28%), Positives = 28/60 (46%)
 Frame = +2

Query: 41   TKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPARPAERSRLCYRKKTVKR 220
            +K   R++V      L YQ++ K  + PR  +   +L G+     A  S  C R  T++R
Sbjct: 2336 SKQRPRKMVIRGSNGLDYQFLLKGHEDPRQDERVMQLFGLVNTLLANNSETCRRNLTIQR 2395


>U97016-3|AAN84885.1| 2695|Caenorhabditis elegans Lethal protein 363,
            isoform a protein.
          Length = 2695

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 17/60 (28%), Positives = 28/60 (46%)
 Frame = +2

Query: 41   TKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPARPAERSRLCYRKKTVKR 220
            +K   R++V      L YQ++ K  + PR  +   +L G+     A  S  C R  T++R
Sbjct: 2339 SKQRPRKMVIRGSNGLDYQFLLKGHEDPRQDERVMQLFGLVNTLLANNSETCRRNLTIQR 2398


>AC006712-11|AAK39327.2|  308|Caenorhabditis elegans Hypothetical
           protein Y119C1B.10 protein.
          Length = 308

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 16/70 (22%), Positives = 31/70 (44%)
 Frame = +2

Query: 5   EGLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPARPAER 184
           EG   + R++ N     R +++    + VY+  K         QC +++R ++      R
Sbjct: 127 EGSVKKPRITDNVAERIRDLLKQGSSKDVYEMAKSEGLRVSRRQCSNQVRNVRAPAVEPR 186

Query: 185 SRLCYRKKTV 214
            RL  +KK +
Sbjct: 187 PRLQRKKKEI 196


>Z75710-2|CAB00025.2|  381|Caenorhabditis elegans Hypothetical
           protein D1081.4 protein.
          Length = 381

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = -2

Query: 327 LACCAFRTFTIFCSSIKKALTMRCFTHL*QRTPP*TRFTVFLR*QRRER 181
           L+CCA ++  + C ++++     CF  +  RT P      F   +RRER
Sbjct: 142 LSCCASKS-NMECCALREEEVRACFHEILLRTRPNLNIQGFELRKRRER 189


>U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily assigned
            gene nameprotein 308, isoform c protein.
          Length = 7548

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 17/68 (25%), Positives = 32/68 (47%)
 Frame = +1

Query: 148  TTRYPAREARRAFSSLLPQEDSEARLWRCSLSQMREAAHRQSFLDRRTEDRESPKSATGQ 327
            TT   +R  R +     P E+S  +      S+  E+  R++F+DRR E+    + A+ +
Sbjct: 4237 TTARQSRVYRSSSQVRAPSEESIQKTEALRRSESLESNARKTFVDRRRENVSLSRKASVE 4296

Query: 328  HKVWQKGR 351
             +   + R
Sbjct: 4297 RETNMEAR 4304


>Z81479-8|CAB03946.1| 1181|Caenorhabditis elegans Hypothetical
           protein C34F6.9 protein.
          Length = 1181

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 19/74 (25%), Positives = 32/74 (43%), Gaps = 2/74 (2%)
 Frame = +2

Query: 95  QYVKKPKKIPRCGQCKSKLRGIQPARPAERSRLCYRKKTVKRVYGG--VLCHKCVKQRIV 268
           +YVK+  KIP+    K   + ++P  P +     Y  +T+     G  VLC     + +V
Sbjct: 529 KYVKQAAKIPQPAVLKEDPQAVKPRPPKKDVLAGYSVETIFLALTGETVLCRSHSLEDLV 588

Query: 269 RAFLIEEQKIVKVL 310
           R    E   +  +L
Sbjct: 589 RLKQEELDAVTSIL 602


>Z70718-5|CAA94670.1|  197|Caenorhabditis elegans Hypothetical
           protein C04G2.8 protein.
          Length = 197

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
 Frame = +2

Query: 20  RRRLSYNTKSNQRRIVRTPG-GRLVYQYVKKPKKIPRCGQCKSKLRGIQPARPAERSR 190
           RRR S  ++S++R +VR+   G +  +   +     R G+ +S  R    +R   RSR
Sbjct: 80  RRRRSSTSRSSRRSVVRSASRGSVSRRSSSRGSVYGRTGRSRSSKRSRSRSRSRSRSR 137


>AC025727-10|AAK66029.1|  707|Caenorhabditis elegans Hypothetical
           protein Y73E7A.8 protein.
          Length = 707

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +2

Query: 143 SKLRGIQPARPAERSRLCYRKKTVKRVYGGVL 238
           +KL   +P RP ++     R KT+K  YG VL
Sbjct: 584 TKLLAKKPRRPIKKRVKTQRTKTIKLHYGDVL 615


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,818,148
Number of Sequences: 27780
Number of extensions: 139464
Number of successful extensions: 436
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 430
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 436
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 651753158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)