Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_I06
         (652 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1450.04 |tef5||translation elongation factor EF-1 beta subun...   146   2e-36
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce...    29   0.77 
SPCC126.05c |mrpl17||mitochondrial ribosomal protein subunit L17...    27   1.8  
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc...    25   7.2  
SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces po...    25   9.5  

>SPCC1450.04 |tef5||translation elongation factor EF-1 beta subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 214

 Score =  146 bits (355), Expect = 2e-36
 Identities = 81/198 (40%), Positives = 108/198 (54%), Gaps = 1/198 (0%)
 Frame = +3

Query: 60  MALGDVKTAQGLNELNQYLAERSYVSGYTPSQADIKVFEQVGKVP-AASLPHVLRWYSHI 236
           M   D+ +  GL +LN +L ++S++ GY PSQAD  VF+ VG  P  A  P+  RWY  I
Sbjct: 1   MGFSDLTSDAGLKQLNDFLLDKSFIEGYEPSQADAVVFKAVGVAPDTAKYPNGARWYKQI 60

Query: 237 ASYTPAERKTWSEGVSXXXXXXXXXXXXXXSNXXXXXXXXLFGSGXXXXXXXXXXXXXXX 416
           A+Y  A     ++ VS               +        LFGS                
Sbjct: 61  ATYDLATLPGTAKEVSAYGPEGAAAAEEDEID--------LFGS-DEEEDPEAERIKAER 111

Query: 417 LKAYADKKSKKPALIAKSSIILDVKPWDDETDMKEMENQVRTIEMDGLLWGASKLVPVGY 596
           +  Y  KK+ KP  + KS + LDVKPWDDET M E+E  VR+I+MDGL+WG SKLVPVG+
Sbjct: 112 VAEYNKKKAAKPKAVHKSLVTLDVKPWDDETPMDELEKAVRSIQMDGLVWGLSKLVPVGF 171

Query: 597 GINKLQIMCVIEDXQVSV 650
           G+NK QI  V+ED +VS+
Sbjct: 172 GVNKFQINLVVEDDKVSL 189


>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1418

 Score = 28.7 bits (61), Expect = 0.77
 Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
 Frame = -2

Query: 552 PFQLCALGFPFLSYLSHHPMVL--HQGL*RTLQ 460
           P+QL  L + +L + +HHP +L    GL +T+Q
Sbjct: 558 PYQLKGLNWLYLRWYTHHPCILADEMGLGKTVQ 590


>SPCC126.05c |mrpl17||mitochondrial ribosomal protein subunit
          L17|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 268

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -3

Query: 68 QCHFSIRNLIYSSKPHGPATP 6
          Q H S+RN I SSKP   +TP
Sbjct: 17 QFHISVRNSIQSSKPLSNSTP 37


>SPAC328.05 |||RNA-binding protein involved in export of
           mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 434

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -3

Query: 62  HFSIRNLIYSSKPHGPAT 9
           H  I +L+Y + PHGP +
Sbjct: 262 HHKIEDLVYHAYPHGPCS 279


>SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 811

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +3

Query: 432 DKKSKKPALIAKSSIILDVKPWDDETDMKEME 527
           DK+S  P LIA++ +  ++   D+   +KE E
Sbjct: 692 DKESNSPVLIAETRLFNNLFKCDNPAALKEQE 723


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,383,132
Number of Sequences: 5004
Number of extensions: 42975
Number of successful extensions: 104
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)