Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_I06
         (652 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L25599-6|AAA28051.1|  213|Caenorhabditis elegans Hypothetical pr...   175   2e-44
Z95559-20|CAB63360.2|  263|Caenorhabditis elegans Hypothetical p...   120   9e-28
Z66495-5|CAA91272.1|  501|Caenorhabditis elegans Hypothetical pr...    29   2.9  
AF038613-2|AAB92049.1|  477|Caenorhabditis elegans Cytochrome p4...    29   3.8  
Z34799-1|CAA84315.1|  147|Caenorhabditis elegans Hypothetical pr...    28   5.0  
U42835-6|AAA83589.2|  816|Caenorhabditis elegans Dehydrogenases,...    28   5.0  

>L25599-6|AAA28051.1|  213|Caenorhabditis elegans Hypothetical
           protein F54H12.6 protein.
          Length = 213

 Score =  175 bits (426), Expect = 2e-44
 Identities = 92/196 (46%), Positives = 118/196 (60%), Gaps = 1/196 (0%)
 Frame = +3

Query: 66  LGDVKTAQGLNELNQYLAERSYVSGYTPSQADIKVFEQVGKVPAASL-PHVLRWYSHIAS 242
           + DVK+  GL   N  LAE+++ +G+  S  D ++F  +G  P AS  P+V RWY+++AS
Sbjct: 2   VADVKSPAGLAAFNTTLAEQAFATGFVLSGEDAQLFAALGSAPNASTYPNVARWYANVAS 61

Query: 243 YTPAERKTWSEGVSXXXXXXXXXXXXXXSNXXXXXXXXLFGSGXXXXXXXXXXXXXXXLK 422
           YT AERKTW+                            LFGS                L 
Sbjct: 62  YTDAERKTWASAGGSAPAAAAADGDDFD----------LFGSDDEEEDAEKAKIVEERLA 111

Query: 423 AYADKKSKKPALIAKSSIILDVKPWDDETDMKEMENQVRTIEMDGLLWGASKLVPVGYGI 602
           AYA+KK+KK   IAKSS+ILDVKPWDDETD+ EME  VR+IEMDGL+WG +KL+P+GYGI
Sbjct: 112 AYAEKKAKKAGPIAKSSVILDVKPWDDETDLGEMEKLVRSIEMDGLVWGGAKLIPIGYGI 171

Query: 603 NKLQIMCVIEDXQVSV 650
            KLQI+ VIED +VSV
Sbjct: 172 KKLQIITVIEDLKVSV 187


>Z95559-20|CAB63360.2|  263|Caenorhabditis elegans Hypothetical
           protein Y41E3.10a protein.
          Length = 263

 Score =  120 bits (289), Expect = 9e-28
 Identities = 59/98 (60%), Positives = 69/98 (70%)
 Frame = +3

Query: 357 LFGSGXXXXXXXXXXXXXXXLKAYADKKSKKPALIAKSSIILDVKPWDDETDMKEMENQV 536
           LFGS                L AYA KK+ K   IAKSS+ILDVKPWDDETD+ EME  V
Sbjct: 140 LFGSEDEEEDEEKKKVVEERLAAYAAKKATKAGPIAKSSVILDVKPWDDETDLGEMEKLV 199

Query: 537 RTIEMDGLLWGASKLVPVGYGINKLQIMCVIEDXQVSV 650
           R+IEMDGL+WG +KL+P+GYGI KLQI+ VIED +VSV
Sbjct: 200 RSIEMDGLVWGGAKLIPIGYGIKKLQIITVIEDLKVSV 237


>Z66495-5|CAA91272.1|  501|Caenorhabditis elegans Hypothetical
           protein C36A4.6 protein.
          Length = 501

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = +3

Query: 90  GLNELNQYLAERSYVSGYTPSQADIKVFEQVGKVPA 197
           G+N+LNQ L + +Y +G+  +++ I      GK+ A
Sbjct: 117 GMNQLNQSLLQNTYATGWKHTRSAIAPIFSTGKMKA 152


>AF038613-2|AAB92049.1|  477|Caenorhabditis elegans Cytochrome p450
           family protein 25A5 protein.
          Length = 477

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 11/36 (30%), Positives = 22/36 (61%)
 Frame = +3

Query: 90  GLNELNQYLAERSYVSGYTPSQADIKVFEQVGKVPA 197
           G+N+LNQ L + +Y +G+  +++ +      GK+ A
Sbjct: 93  GMNQLNQSLLQNTYATGWKHTRSAVAPIFSTGKMKA 128


>Z34799-1|CAA84315.1|  147|Caenorhabditis elegans Hypothetical
           protein F34D10.3 protein.
          Length = 147

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -3

Query: 467 LCNKSGFLRLFVSICLKTFFTDSGCFCILF 378
           L N SG  + ++ +CL  F TD+ CF +LF
Sbjct: 27  LDNSSGD-KQYIFLCLIVFATDAACFGVLF 55


>U42835-6|AAA83589.2|  816|Caenorhabditis elegans Dehydrogenases,
           short chain protein27 protein.
          Length = 816

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 17/42 (40%), Positives = 24/42 (57%)
 Frame = +3

Query: 471 SIILDVKPWDDETDMKEMENQVRTIEMDGLLWGASKLVPVGY 596
           SI+L VKP DDE  ++++ NQ     M G LW A++     Y
Sbjct: 436 SIMLCVKPADDEI-VQKIRNQ-----MSGALWSAAQFAVTSY 471


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,361,246
Number of Sequences: 27780
Number of extensions: 249056
Number of successful extensions: 700
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 669
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 699
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)