Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_I05
(311 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyce... 27 0.65
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch... 27 0.65
SPBC3H7.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 0.86
SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synth... 26 1.5
SPAC23H3.05c |swd1||COMPASS complex subunit Swd1|Schizosaccharom... 26 1.5
SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A |S... 25 2.6
SPBC18H10.17c |||mitochondrial ribosomal protein subunit Mrp49 |... 25 2.6
SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC su... 25 3.5
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo... 25 3.5
SPAC1D4.12 |rad15|rhp3|transcription factor TFIIH complex subuni... 25 3.5
SPAC13G6.14 |aps1|SPAC24B11.03|diadenosine 5',5'''-p1,p6-hexapho... 25 3.5
SPBC947.15c |||NADH dehydrogenase|Schizosaccharomyces pombe|chr ... 25 3.5
SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter family|Sch... 24 4.6
SPAC688.02c |mis14||kinetochore protein Mis14 |Schizosaccharomyc... 24 6.1
SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 24 6.1
SPBC2G2.12 |||histidine-tRNA ligase|Schizosaccharomyces pombe|ch... 24 6.1
SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyce... 24 6.1
SPAC17A5.09c |||protein phosphatase regulatory subunit Glc9|Schi... 24 6.1
SPBC32H8.06 |mug93||TPR repeat protein, meiotically spliced|Schi... 24 6.1
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom... 23 8.1
>SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1004
Score = 27.1 bits (57), Expect = 0.65
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +1
Query: 124 IRRAMLKPEEQNSFVADLKDQYPELKKD 207
++R KP +Q S L+ QY ELKK+
Sbjct: 89 VQRKASKPTKQKSVFTPLEQQYLELKKN 116
>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
Mok12|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2352
Score = 27.1 bits (57), Expect = 0.65
Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Frame = -1
Query: 263 EGGFTFLMIRHKVSTNSFLSFFNSGY*SFKSATKEFCSSGFSIALRIFPGN-CSFSLSIG 87
E GF ++++ +ST S LS+F + SF + + F + G+ + + + F LS G
Sbjct: 169 ERGF-YVVVDFTISTLSELSYFVNSSMSFANTSAPFSTKGYKMKYKHPEYHYTDFQLSNG 227
Query: 86 NIYS 75
+ YS
Sbjct: 228 SSYS 231
>SPBC3H7.12 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 287
Score = 26.6 bits (56), Expect = 0.86
Identities = 19/65 (29%), Positives = 31/65 (47%)
Frame = +1
Query: 82 ILPIESEKEQLPGKIRRAMLKPEEQNSFVADLKDQYPELKKDRKLLVDTLCLIMRNVKPP 261
I+ ESEKE++P LK QNS V+ + + L + + T + ++ P
Sbjct: 140 IMQEESEKEEIPSNASSISLK--SQNSIVSRTSNPFSCLNHSPRQIHKT---VRNHLFSP 194
Query: 262 SLPNN 276
LP+N
Sbjct: 195 PLPSN 199
>SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synthase
Ade3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1323
Score = 25.8 bits (54), Expect = 1.5
Identities = 17/60 (28%), Positives = 27/60 (45%)
Frame = -1
Query: 275 LLGSEGGFTFLMIRHKVSTNSFLSFFNSGY*SFKSATKEFCSSGFSIALRIFPGNCSFSL 96
+LGS G+ ++ H+ + N F FFN +F C FS + PG S+ +
Sbjct: 1119 VLGSGNGWATSILLHEDARNEFYRFFNERKDTFGLGICNGCQL-FSRLKSLIPGAKSWPM 1177
>SPAC23H3.05c |swd1||COMPASS complex subunit
Swd1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 398
Score = 25.8 bits (54), Expect = 1.5
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +1
Query: 112 LPGKIRRAMLKPEEQNSFVADLKDQYPEL 198
L + A L P + N+FVA L D+ P+L
Sbjct: 106 LSAPVWSASLHPHKINTFVASLLDESPQL 134
>SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 660
Score = 25.0 bits (52), Expect = 2.6
Identities = 7/20 (35%), Positives = 15/20 (75%)
Frame = -2
Query: 307 IQNHHQPGRNGYWEVKVVSH 248
+QN +Q ++ +WE ++VS+
Sbjct: 515 MQNFYQDSKSNHWEAQIVSY 534
>SPBC18H10.17c |||mitochondrial ribosomal protein subunit Mrp49
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 175
Score = 25.0 bits (52), Expect = 2.6
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +1
Query: 70 KEEYILPIESEKEQLPGKIRRAMLKPEEQNSFVADLKD 183
K + P+ S+ +LP +RR + +E + +ADL D
Sbjct: 84 KYRSVQPLTSDLLKLPIPVRRRKIMRQEVPNTIADLAD 121
>SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC
subunit Psc3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 962
Score = 24.6 bits (51), Expect = 3.5
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +1
Query: 181 DQYPELKKDRKLLVDTLC 234
D P LK+D KLLV +C
Sbjct: 684 DSIPALKEDLKLLVTDIC 701
>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1065
Score = 24.6 bits (51), Expect = 3.5
Identities = 15/64 (23%), Positives = 27/64 (42%)
Frame = +1
Query: 16 ELPEEKPDINLLEESTFVKEEYILPIESEKEQLPGKIRRAMLKPEEQNSFVADLKDQYPE 195
E + P L+E + E +LP + L + R + + S + LKD+
Sbjct: 146 EFAQLDPYSRLMETERAIDHEGLLPAHEKLIDLRKREREILQNKNQGQSTLNSLKDRQQA 205
Query: 196 LKKD 207
L+K+
Sbjct: 206 LEKE 209
>SPAC1D4.12 |rad15|rhp3|transcription factor TFIIH complex subunit
Rad15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 772
Score = 24.6 bits (51), Expect = 3.5
Identities = 20/61 (32%), Positives = 26/61 (42%)
Frame = +1
Query: 37 DINLLEESTFVKEEYILPIESEKEQLPGKIRRAMLKPEEQNSFVADLKDQYPELKKDRKL 216
D N + +LP + KE +PG IRRA F+A LK LK K+
Sbjct: 293 DANAANDEDQFMANPVLPEDVLKEAVPGNIRRA-------EHFIAFLKRFVEYLKTRMKV 345
Query: 217 L 219
L
Sbjct: 346 L 346
>SPAC13G6.14 |aps1|SPAC24B11.03|diadenosine
5',5'''-p1,p6-hexaphosphate hydrolase Aps1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 210
Score = 24.6 bits (51), Expect = 3.5
Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
Frame = +1
Query: 97 SEKEQLPGKIRRAMLKPEEQNSF----VADLKDQYPELKKDRK 213
S +L + + +L P + F V L+D YPE++K R+
Sbjct: 136 STNTELGAEAEKLLLPPRAECEFFEVIVERLEDNYPEMRKRRR 178
>SPBC947.15c |||NADH dehydrogenase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 551
Score = 24.6 bits (51), Expect = 3.5
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +1
Query: 148 EEQNSFVADLKDQYPELKKD 207
E Q+ D+KD +PEL+KD
Sbjct: 272 EMQDFIDNDVKDMFPELQKD 291
>SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 791
Score = 24.2 bits (50), Expect = 4.6
Identities = 10/37 (27%), Positives = 21/37 (56%)
Frame = -2
Query: 124 FSPVTVPFHFLLAIYILLSQK*ILLVSLYQVFPQVIL 14
+SPV +P F++ I + L +++S + FP ++
Sbjct: 412 YSPVMLPIAFIINIALSLGAFSSMMISFFLRFPTDVI 448
>SPAC688.02c |mis14||kinetochore protein Mis14 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 210
Score = 23.8 bits (49), Expect = 6.1
Identities = 11/46 (23%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Frame = +1
Query: 67 VKEEYILPIESEKEQLPGKIRRAMLKP-EEQNSFVADLKDQYPELK 201
V++ ++L + ++ +P + +A + E+Q +F+ ++KD Y L+
Sbjct: 117 VEDAHVL-VARYRKSVPAQYEKAYVDAMEQQTAFLRNVKDDYVSLQ 161
>SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 475
Score = 23.8 bits (49), Expect = 6.1
Identities = 10/30 (33%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Frame = -1
Query: 290 TWT*WLLGSEGGFTFLMIRH-KVSTNSFLS 204
TW+ W+L SE F M ++ +++++S +S
Sbjct: 408 TWSPWILPSESRLKFEMAKYPQINSSSSMS 437
>SPBC2G2.12 |||histidine-tRNA ligase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 538
Score = 23.8 bits (49), Expect = 6.1
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +1
Query: 106 EQLPGK-IRRAMLKPEEQNSFVADLKDQYPELKKDRKLL 219
++LP + +RR M+ + VAD +Y LK DR LL
Sbjct: 250 DKLPWEDVRREMVVEKGLKEEVADKIKEYVLLKGDRSLL 288
>SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1151
Score = 23.8 bits (49), Expect = 6.1
Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
Frame = +1
Query: 145 PEEQNSFVADLKDQYPELK---KDRKLLVDT 228
PEE+ F L +Q+P+L+ +DR ++V T
Sbjct: 359 PEEKQQFRIKLLNQFPKLEDIDEDRMIMVFT 389
>SPAC17A5.09c |||protein phosphatase regulatory subunit
Glc9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 310
Score = 23.8 bits (49), Expect = 6.1
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = +1
Query: 1 ARGEEELPEEKPDINLLEESTF 66
+ EE +P++KPD N L + +
Sbjct: 249 SEAEENIPKKKPDFNELRKKHY 270
>SPBC32H8.06 |mug93||TPR repeat protein, meiotically
spliced|Schizosaccharomyces pombe|chr 2|||Manual
Length = 383
Score = 23.8 bits (49), Expect = 6.1
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Frame = +1
Query: 25 EEKPDINLLEESTFVKEEYILPIESEKEQLPGKIRRAMLKPEEQNSFVADL-KDQYPELK 201
EEK ++NL+E+S +V E I+ E L + P +S + L K Y ++
Sbjct: 2 EEKENVNLVEKSNYVALENTREIDVFDEFLNAIGNENTITPVYADSSLTHLRKKSYTKVV 61
Query: 202 KD 207
D
Sbjct: 62 HD 63
>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1692
Score = 23.4 bits (48), Expect = 8.1
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Frame = +1
Query: 31 KPDINL-LEESTFVKEEYILPIE--SEKEQLPGKIRRAMLKPEEQNS 162
+PD N L ++ K + L SEK ++P R A +KP ++N+
Sbjct: 97 EPDENFSLSDTGRTKSDTALAARESSEKSEVPRDTRSAGIKPYKENN 143
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.313 0.136 0.386
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,236,287
Number of Sequences: 5004
Number of extensions: 23361
Number of successful extensions: 63
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 81889040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
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