Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_I04
         (601 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70267-1|CAA94211.1|  307|Caenorhabditis elegans Hypothetical pr...    28   4.4  
Z81530-8|CAB04305.2|  329|Caenorhabditis elegans Hypothetical pr...    28   5.9  
AF040644-2|AAN63399.1|  963|Caenorhabditis elegans Gamma-tubulin...    27   7.7  

>Z70267-1|CAA94211.1|  307|Caenorhabditis elegans Hypothetical
           protein K04C1.1 protein.
          Length = 307

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 17/46 (36%), Positives = 22/46 (47%)
 Frame = +3

Query: 258 NRSEVILL*NEQKKKL*RPKENLFRNFRLFFAYNFFIFHFTIKSNR 395
           N S   L  NE    +  P  NLF     +FAY  +I++F I  NR
Sbjct: 74  NLSNFFLTHNEFNMNMGCPI-NLFHALHYYFAYTQYIYNFLISYNR 118


>Z81530-8|CAB04305.2|  329|Caenorhabditis elegans Hypothetical
           protein F36D1.3 protein.
          Length = 329

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 13/26 (50%), Positives = 14/26 (53%)
 Frame = +2

Query: 335 FPVIFCIQLFYFPFYDKK**E*CRQF 412
           FPVIFC       FY K   E CR+F
Sbjct: 123 FPVIFCANRAIIVFYPKNHNEICRRF 148


>AF040644-2|AAN63399.1|  963|Caenorhabditis elegans Gamma-tubulin
           interacting proteinprotein 1, isoform b protein.
          Length = 963

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = -1

Query: 376 KWKIKKLYAKNNRKFLNKFSFGRYNFFFC 290
           K++  KLY+K  RKF  K  F R  FF C
Sbjct: 919 KFQNFKLYSKEKRKFTRKTIFNR--FFLC 945


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,218,425
Number of Sequences: 27780
Number of extensions: 241797
Number of successful extensions: 548
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 534
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 548
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1279376318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)