Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_I02
         (220 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z77659-1|CAB01164.1|  401|Caenorhabditis elegans Hypothetical pr...    28   1.0  
AF036692-9|AAB88330.1|  389|Caenorhabditis elegans Hypothetical ...    26   3.2  
Z49908-5|CAA90096.1|  353|Caenorhabditis elegans Hypothetical pr...    25   7.3  
AC024859-18|AAK29974.1|  121|Caenorhabditis elegans Hypothetical...    25   7.3  
U28735-8|AAF99957.2|  434|Caenorhabditis elegans Acetylcholine r...    25   9.6  
AY519852-1|AAR89633.1|  434|Caenorhabditis elegans acetylcholine...    25   9.6  

>Z77659-1|CAB01164.1|  401|Caenorhabditis elegans Hypothetical
           protein F23B12.1 protein.
          Length = 401

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -3

Query: 197 DT*PLASNCLL*LCPLTKSLICLHDKFSRDLL 102
           D   LA NC+     ++K +IC+H   S DL+
Sbjct: 217 DAFQLAFNCMPLCAVVSKKIICMHGGISEDLI 248


>AF036692-9|AAB88330.1|  389|Caenorhabditis elegans Hypothetical
           protein C44B12.7 protein.
          Length = 389

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -3

Query: 182 ASNCLL*LCPLTKSLIC 132
           +SNC+L L PL  SL+C
Sbjct: 134 SSNCVLLLAPLINSLVC 150


>Z49908-5|CAA90096.1|  353|Caenorhabditis elegans Hypothetical
           protein C07E3.5 protein.
          Length = 353

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +3

Query: 18  IVRGNIQLNNGRTRASYFGNGRMY 89
           I R NI+L + + R  YF   RMY
Sbjct: 219 IHRKNIRLTDDQVREEYFNRQRMY 242


>AC024859-18|AAK29974.1|  121|Caenorhabditis elegans Hypothetical
           protein Y71H2AM.5 protein.
          Length = 121

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 8/25 (32%), Positives = 12/25 (48%)
 Frame = -3

Query: 128 HDKFSRDLLWTCPIHTTIAKIRSAR 54
           H+   +DLLW  P      ++R  R
Sbjct: 40  HESVKKDLLWAAPYDARFPQVRKQR 64


>U28735-8|AAF99957.2|  434|Caenorhabditis elegans Acetylcholine
           receptor protein 22 protein.
          Length = 434

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 15/47 (31%), Positives = 20/47 (42%)
 Frame = +2

Query: 68  FWQWSYVLDTSIVNLY*TCHANKSKISSTDTIIGDNYWLRVRYQDTL 208
           F  WSY       N+  T    KSK S  D +  +   +  +Y DTL
Sbjct: 177 FGSWSYQAHAISFNVLDTFVPKKSKNSEWDIVSFNATKMTTKYGDTL 223


>AY519852-1|AAR89633.1|  434|Caenorhabditis elegans acetylcholine
           receptor (51.1 kD)(acr-22) protein.
          Length = 434

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 15/47 (31%), Positives = 20/47 (42%)
 Frame = +2

Query: 68  FWQWSYVLDTSIVNLY*TCHANKSKISSTDTIIGDNYWLRVRYQDTL 208
           F  WSY       N+  T    KSK S  D +  +   +  +Y DTL
Sbjct: 177 FGSWSYQAHAISFNVLDTFVPKKSKNSEWDIVSFNATKMTTKYGDTL 223


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,210,424
Number of Sequences: 27780
Number of extensions: 89301
Number of successful extensions: 222
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 215
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 222
length of database: 12,740,198
effective HSP length: 52
effective length of database: 11,295,638
effective search space used: 225912760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)