Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_H24
         (618 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.              46   2e-07
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   2.4  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    22   4.2  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   5.5  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   7.3  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   9.6  

>AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.
          Length = 133

 Score = 46.4 bits (105), Expect = 2e-07
 Identities = 22/22 (100%), Positives = 22/22 (100%)
 Frame = +2

Query: 551 EMATAASSSSLEKSYELPDGQV 616
           EMATAASSSSLEKSYELPDGQV
Sbjct: 1   EMATAASSSSLEKSYELPDGQV 22


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +2

Query: 155  LRVAPEEHPVLLTEAPLNPKANREKM 232
            LR+ P  H V+ T   +NP  + EK+
Sbjct: 1461 LRLGPCWHAVMTTYPRINPDNHNEKL 1486


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = -3

Query: 157 QLIVEGVMPDLLHIV 113
           Q +V+ V PD+LH++
Sbjct: 23  QTVVDKVPPDMLHLI 37


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +2

Query: 17  HEEDSYVCDEAQSKRGILTLKYP 85
           HE+   V D A S  G+  L YP
Sbjct: 395 HEQQKPVADVAASGPGLAFLVYP 417


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +2

Query: 17  HEEDSYVCDEAQSKRGILTLKYP 85
           HE+   V D A S  G+  L YP
Sbjct: 342 HEQQKPVADVAVSGPGLAFLVYP 364


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = +2

Query: 353 SHTVPIYEGYALPHAILRLDLAGRDLTDYLMKI 451
           +H +  Y GY  P   +  D A  + T+  MK+
Sbjct: 187 NHQLISYAGYKNPDGTIIGDPANIEFTELCMKL 219


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,357
Number of Sequences: 438
Number of extensions: 4325
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18337950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)