Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_H23
         (433 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23D3.10c |eng2||endo-1,3-beta-glucanase Eng2|Schizosaccharom...    27   1.6  
SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces ...    27   1.6  
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc...    25   3.8  
SPAC630.14c |tup12||transcriptional corepressor Tup12 |Schizosac...    25   5.0  
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    24   8.7  
SPBC27B12.01c |mmm1|SPBC30B4.09c|Mdm10/Mdm12/Mmm1 complex subuni...    24   8.7  

>SPAC23D3.10c |eng2||endo-1,3-beta-glucanase
           Eng2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 706

 Score = 26.6 bits (56), Expect = 1.6
 Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
 Frame = -1

Query: 172 PLPVTEFSGAPEPSCVTKLYVAGATDIFAILLKKMNLSSLYSTR---LQYVRIC 20
           P+P    S    P+ +  +  A ATDI   ++   NL S+Y++      Y ++C
Sbjct: 339 PIPWNGGSNTYSPTALAAIRAACATDINFDVVNASNLDSMYTSGKIVAMYAQVC 392


>SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 509

 Score = 26.6 bits (56), Expect = 1.6
 Identities = 13/32 (40%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
 Frame = -3

Query: 320 SQSAVCKFWDPAFEHCKLHTHGH-NAFCAAFF 228
           S+  + KFWDP    C    HGH N    A F
Sbjct: 225 SKDNLVKFWDPRTGTCIATLHGHKNTIMQASF 256


>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1016

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = -1

Query: 208 PVVSSS*TFSQQPLPVTEFSGAPEPSCVTKLYVAGAT 98
           PV SSS T S  P P T  S  P P+  +    A +T
Sbjct: 840 PVQSSSTTSSITPTPTTTSSITPTPTTTSTTTTAQST 876


>SPAC630.14c |tup12||transcriptional corepressor Tup12
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 586

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -3

Query: 320 SQSAVCKFWDPAFEHCKLHTHGHN 249
           S+    +FW P   H +L   GHN
Sbjct: 531 SKDRTIQFWSPDSPHSQLTLQGHN 554


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
            Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = +3

Query: 18   EQIRTYCNLVEYKELKFIFFSNIANISVAPATYNLVTQDGSG 143
            E++ +  N+ +    K++ F N+ N+  A A+Y  + Q G G
Sbjct: 1321 EEVCSVFNISKSVCSKYVQFGNVFNLLHAGASYIRIHQKGYG 1362


>SPBC27B12.01c |mmm1|SPBC30B4.09c|Mdm10/Mdm12/Mmm1 complex subunit
           Mmm1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 346

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -3

Query: 290 PAFEHCKLHTHGHNA 246
           P F HC++  H HN+
Sbjct: 151 PVFSHCRVLPHQHNS 165


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,469,364
Number of Sequences: 5004
Number of extensions: 25755
Number of successful extensions: 80
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 154067960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)