Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_H23
(433 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68213-4|CAA92441.1| 73|Caenorhabditis elegans Hypothetical pr... 53 8e-08
AF202929-1|AAK69379.1| 73|Caenorhabditis elegans Nx protein. 53 8e-08
AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA ... 31 0.47
AF039718-2|AAB96745.2| 1156|Caenorhabditis elegans Germ-line hel... 31 0.47
U97194-2|AAN84846.1| 806|Caenorhabditis elegans Prion-like-(q/n... 27 4.4
U97194-1|AAK68236.1| 788|Caenorhabditis elegans Prion-like-(q/n... 27 4.4
AF170425-1|AAF89696.1| 788|Caenorhabditis elegans putative MAP-... 27 4.4
Z81031-4|CAF31468.2| 421|Caenorhabditis elegans Hypothetical pr... 27 7.7
Z81031-3|CAF31467.1| 455|Caenorhabditis elegans Hypothetical pr... 27 7.7
Z81031-2|CAF31464.1| 429|Caenorhabditis elegans Hypothetical pr... 27 7.7
Z81031-1|CAB02718.4| 432|Caenorhabditis elegans Hypothetical pr... 27 7.7
AF539814-1|AAN16459.1| 421|Caenorhabditis elegans tyramine rece... 27 7.7
AF539813-1|AAN16458.1| 444|Caenorhabditis elegans tyramine rece... 27 7.7
>Z68213-4|CAA92441.1| 73|Caenorhabditis elegans Hypothetical
protein C01F6.9 protein.
Length = 73
Score = 53.2 bits (122), Expect = 8e-08
Identities = 21/26 (80%), Positives = 23/26 (88%)
Frame = +2
Query: 278 AQMPDPKTYKQHFENKHPKNDLPEDL 355
A MPDPKTYKQHFENKHPK+ LP +L
Sbjct: 45 AMMPDPKTYKQHFENKHPKSPLPAEL 70
>AF202929-1|AAK69379.1| 73|Caenorhabditis elegans Nx protein.
Length = 73
Score = 53.2 bits (122), Expect = 8e-08
Identities = 21/26 (80%), Positives = 23/26 (88%)
Frame = +2
Query: 278 AQMPDPKTYKQHFENKHPKNDLPEDL 355
A MPDPKTYKQHFENKHPK+ LP +L
Sbjct: 45 AMMPDPKTYKQHFENKHPKSPLPAEL 70
>AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA
helicase-4 protein.
Length = 1156
Score = 30.7 bits (66), Expect = 0.47
Identities = 17/36 (47%), Positives = 21/36 (58%)
Frame = -1
Query: 238 QPSSGQ*HCDPVVSSS*TFSQQPLPVTEFSGAPEPS 131
+PS+G DP+ +S TF Q P TEF GAP S
Sbjct: 50 EPSAGF-GIDPITTSK-TFGSQTTPKTEFGGAPSLS 83
>AF039718-2|AAB96745.2| 1156|Caenorhabditis elegans Germ-line
helicase protein 4 protein.
Length = 1156
Score = 30.7 bits (66), Expect = 0.47
Identities = 17/36 (47%), Positives = 21/36 (58%)
Frame = -1
Query: 238 QPSSGQ*HCDPVVSSS*TFSQQPLPVTEFSGAPEPS 131
+PS+G DP+ +S TF Q P TEF GAP S
Sbjct: 50 EPSAGF-GIDPITTSK-TFGSQTTPKTEFGGAPSLS 83
>U97194-2|AAN84846.1| 806|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 21,
isoform b protein.
Length = 806
Score = 27.5 bits (58), Expect = 4.4
Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
Frame = -1
Query: 247 LFVQPSSGQ*HCDPVVSSS*TFSQQPLPVTEFSGAPEPSCVTKLYV---AGATDIFAILL 77
L V+ S + H VSS T S+ P P + +G +P T+ +TDIF+
Sbjct: 135 LKVEEMSDEKHAQSPVSSDMTTSKSPTPSKKENGLMKPPQSTEKAQRKRKESTDIFSSEK 194
Query: 76 KKMNLSSLYST 44
+K++L ++ S+
Sbjct: 195 RKLSLETVASS 205
>U97194-1|AAK68236.1| 788|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 21,
isoform a protein.
Length = 788
Score = 27.5 bits (58), Expect = 4.4
Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
Frame = -1
Query: 247 LFVQPSSGQ*HCDPVVSSS*TFSQQPLPVTEFSGAPEPSCVTKLYV---AGATDIFAILL 77
L V+ S + H VSS T S+ P P + +G +P T+ +TDIF+
Sbjct: 135 LKVEEMSDEKHAQSPVSSDMTTSKSPTPSKKENGLMKPPQSTEKAQRKRKESTDIFSSEK 194
Query: 76 KKMNLSSLYST 44
+K++L ++ S+
Sbjct: 195 RKLSLETVASS 205
>AF170425-1|AAF89696.1| 788|Caenorhabditis elegans putative
MAP-like protein protein.
Length = 788
Score = 27.5 bits (58), Expect = 4.4
Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
Frame = -1
Query: 247 LFVQPSSGQ*HCDPVVSSS*TFSQQPLPVTEFSGAPEPSCVTKLYV---AGATDIFAILL 77
L V+ S + H VSS T S+ P P + +G +P T+ +TDIF+
Sbjct: 135 LKVEEMSDEKHAQSPVSSDMTTSKSPTPSKKENGLMKPPQSTEKAQRKRKESTDIFSSEK 194
Query: 76 KKMNLSSLYST 44
+K++L ++ S+
Sbjct: 195 RKLSLETVASS 205
>Z81031-4|CAF31468.2| 421|Caenorhabditis elegans Hypothetical
protein C02D4.2f protein.
Length = 421
Score = 26.6 bits (56), Expect = 7.7
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = -3
Query: 290 PAFEHCKLHTHGHNAFCAAFFWSVAL*PCCFFILDI-FSAAFACD*IFWCPRAIL 129
P E CKLH AF + + +L P + IL++ F AF CP+A+L
Sbjct: 359 PFCETCKLHAKVEQAFTWLGYINSSLNPFLYGILNLEFRRAFK---KILCPKAVL 410
>Z81031-3|CAF31467.1| 455|Caenorhabditis elegans Hypothetical
protein C02D4.2e protein.
Length = 455
Score = 26.6 bits (56), Expect = 7.7
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = -3
Query: 290 PAFEHCKLHTHGHNAFCAAFFWSVAL*PCCFFILDI-FSAAFACD*IFWCPRAIL 129
P E CKLH AF + + +L P + IL++ F AF CP+A+L
Sbjct: 393 PFCETCKLHAKVEQAFTWLGYINSSLNPFLYGILNLEFRRAFK---KILCPKAVL 444
>Z81031-2|CAF31464.1| 429|Caenorhabditis elegans Hypothetical
protein C02D4.2b protein.
Length = 429
Score = 26.6 bits (56), Expect = 7.7
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = -3
Query: 290 PAFEHCKLHTHGHNAFCAAFFWSVAL*PCCFFILDI-FSAAFACD*IFWCPRAIL 129
P E CKLH AF + + +L P + IL++ F AF CP+A+L
Sbjct: 367 PFCETCKLHAKVEQAFTWLGYINSSLNPFLYGILNLEFRRAFK---KILCPKAVL 418
>Z81031-1|CAB02718.4| 432|Caenorhabditis elegans Hypothetical
protein C02D4.2a protein.
Length = 432
Score = 26.6 bits (56), Expect = 7.7
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = -3
Query: 290 PAFEHCKLHTHGHNAFCAAFFWSVAL*PCCFFILDI-FSAAFACD*IFWCPRAIL 129
P E CKLH AF + + +L P + IL++ F AF CP+A+L
Sbjct: 370 PFCETCKLHAKVEQAFTWLGYINSSLNPFLYGILNLEFRRAFK---KILCPKAVL 421
>AF539814-1|AAN16459.1| 421|Caenorhabditis elegans tyramine
receptor short isoformSER-2a protein.
Length = 421
Score = 26.6 bits (56), Expect = 7.7
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = -3
Query: 290 PAFEHCKLHTHGHNAFCAAFFWSVAL*PCCFFILDI-FSAAFACD*IFWCPRAIL 129
P E CKLH AF + + +L P + IL++ F AF CP+A+L
Sbjct: 359 PFCETCKLHAKVEQAFTWLGYINSSLNPFLYGILNLEFRRAFK---KILCPKAVL 410
>AF539813-1|AAN16458.1| 444|Caenorhabditis elegans tyramine
receptor long isoformSER-2 protein.
Length = 444
Score = 26.6 bits (56), Expect = 7.7
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = -3
Query: 290 PAFEHCKLHTHGHNAFCAAFFWSVAL*PCCFFILDI-FSAAFACD*IFWCPRAIL 129
P E CKLH AF + + +L P + IL++ F AF CP+A+L
Sbjct: 382 PFCETCKLHAKVEQAFTWLGYINSSLNPFLYGILNLEFRRAFK---KILCPKAVL 433
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,375,706
Number of Sequences: 27780
Number of extensions: 154379
Number of successful extensions: 390
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 385
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 390
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 724655464
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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