Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_H22
         (464 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_1082 + 25919767-25919830,25920609-25920799                       27   5.6  
05_06_0026 - 25024807-25025300,25025432-25025495,25025567-250256...    27   7.4  
06_03_0462 - 21030981-21031086,21031330-21031514                       27   9.8  
02_02_0126 - 7031739-7031861,7032187-7032272,7033277-7033421,703...    27   9.8  

>12_02_1082 + 25919767-25919830,25920609-25920799
          Length = 84

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 13/25 (52%), Positives = 13/25 (52%)
 Frame = -2

Query: 205 YFSLFVLKGYCTYHCS*ERADRPRC 131
           Y SLF  KG C  HC  E AD   C
Sbjct: 42  YKSLFCRKGPCREHCDNEGADGGYC 66


>05_06_0026 -
           25024807-25025300,25025432-25025495,25025567-25025662,
           25025719-25025929,25026616-25026690,25026820-25027037
          Length = 385

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 11/19 (57%), Positives = 12/19 (63%), Gaps = 1/19 (5%)
 Frame = +3

Query: 246 PRHGCECYK-TVLLKCCDC 299
           PR GC C K + L K CDC
Sbjct: 180 PRRGCNCKKSSCLKKYCDC 198


>06_03_0462 - 21030981-21031086,21031330-21031514
          Length = 96

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = +1

Query: 4  CRNSARGEYSVEVVWHERALC 66
          C N    +   EVVWHE A C
Sbjct: 10 CDNKVARQLDDEVVWHEEARC 30


>02_02_0126 -
           7031739-7031861,7032187-7032272,7033277-7033421,
           7033504-7033749
          Length = 199

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 21/58 (36%), Positives = 29/58 (50%)
 Frame = +2

Query: 2   AAGIRHEGSTP*RSFGTSERFARHLPATLHDKI*SPIAQLDARATRPVRSFLRTVICA 175
           A+G+    + P R+F  S   +  LPA L D      + L AR+  P RS LR + CA
Sbjct: 2   ASGLVVAATDPLRAFLASAAASHDLPADLRDL----ASSLAARSAVPYRS-LRDIWCA 54


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,719,136
Number of Sequences: 37544
Number of extensions: 205183
Number of successful extensions: 400
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 396
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 400
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 931320312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)