Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_H22
         (464 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97006-1|AAC47965.1| 2076|Caenorhabditis elegans Hypothetical pr...    28   3.8  
U53332-1|AAK31529.2|  580|Caenorhabditis elegans Hypothetical pr...    27   5.0  
DQ178637-1|ABD75716.1|  580|Caenorhabditis elegans F59G1.4 protein.    27   5.0  
Z81110-4|CAB03256.1|  381|Caenorhabditis elegans Hypothetical pr...    27   8.8  
AL117202-29|CAO82059.1|  842|Caenorhabditis elegans Hypothetical...    27   8.8  
AL117202-14|CAB57894.2|  766|Caenorhabditis elegans Hypothetical...    27   8.8  

>U97006-1|AAC47965.1| 2076|Caenorhabditis elegans Hypothetical protein
            C13F10.4 protein.
          Length = 2076

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -2

Query: 373  CKRSVNARTVVVSTGLNHGYIVTIGQSQHFNNTV 272
            CK  +N    V++ G  H ++ ++G  QH N  V
Sbjct: 923  CKDEINRSGHVLALGCLHRHVGSLGSGQHLNTGV 956


>U53332-1|AAK31529.2|  580|Caenorhabditis elegans Hypothetical
           protein F59G1.4 protein.
          Length = 580

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
 Frame = +3

Query: 180 PLRTK-REKYCDNLFNLVIS*IKPRHG--CECYKTVLLKCCDCPIVTI 314
           PL T+  + + +++ NLV+   K  HG  C  Y T+LL    CP + +
Sbjct: 234 PLITRLADSFANSIANLVV---KITHGPSCSLYNTLLLSVLSCPRIRL 278


>DQ178637-1|ABD75716.1|  580|Caenorhabditis elegans F59G1.4 protein.
          Length = 580

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
 Frame = +3

Query: 180 PLRTK-REKYCDNLFNLVIS*IKPRHG--CECYKTVLLKCCDCPIVTI 314
           PL T+  + + +++ NLV+   K  HG  C  Y T+LL    CP + +
Sbjct: 234 PLITRLADSFANSIANLVV---KITHGPSCSLYNTLLLSVLSCPRIRL 278


>Z81110-4|CAB03256.1|  381|Caenorhabditis elegans Hypothetical
           protein T01D3.5 protein.
          Length = 381

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -3

Query: 198 LFLFLKAIAHITVRRNERTGRVARASSCAIG 106
           L L +  I  +TV RN+R GR     S  IG
Sbjct: 183 LMLLVDQIGSVTVARNDRAGRSRIGISATIG 213


>AL117202-29|CAO82059.1|  842|Caenorhabditis elegans Hypothetical
           protein Y47D3A.17c protein.
          Length = 842

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -2

Query: 379 HRCKRSVNARTVVVSTGLNHGYIVTIGQSQHFN 281
           H C+ S+N +   V T      IV  GQSQ F+
Sbjct: 177 HTCRGSINLQEARVHTDKTTSCIVISGQSQTFH 209


>AL117202-14|CAB57894.2|  766|Caenorhabditis elegans Hypothetical
           protein Y47D3A.17a protein.
          Length = 766

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -2

Query: 379 HRCKRSVNARTVVVSTGLNHGYIVTIGQSQHFN 281
           H C+ S+N +   V T      IV  GQSQ F+
Sbjct: 101 HTCRGSINLQEARVHTDKTTSCIVISGQSQTFH 133


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,151,319
Number of Sequences: 27780
Number of extensions: 186614
Number of successful extensions: 433
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 427
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 433
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 829055604
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)