Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_H21
         (516 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0782 + 6543906-6544702,6545717-6547850                           27   6.8  
04_04_0923 + 29441740-29441980,29442321-29442401,29442630-294427...    27   6.8  
05_06_0285 + 26922967-26923051,26923258-26923362,26924044-269240...    27   8.9  

>11_01_0782 + 6543906-6544702,6545717-6547850
          Length = 976

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 18/59 (30%), Positives = 29/59 (49%)
 Frame = -2

Query: 416 ITALQLIRNINYLKIINH*SSRYFLFCISTDSFYLFCFVVLFMSLNVIKILGNSFYFYK 240
           ++AL  +R + YLK+I      + +   +  S    CFV+   +  VIK  GN+  F K
Sbjct: 789 LSALSNLRKLKYLKLIADQLEEFIIKDNALPSLLSLCFVLNRPTFPVIK--GNALRFLK 845


>04_04_0923 +
           29441740-29441980,29442321-29442401,29442630-29442719,
           29443123-29443203,29443721-29443774,29444062-29444111,
           29444542-29444623,29444734-29444838,29445514-29445641,
           29445726-29445797,29445887-29445937,29446029-29446100,
           29446201-29446278,29446446-29447270,29447648-29448556
          Length = 972

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
 Frame = -2

Query: 407 LQLIRNINYLKIINH*SSRYFLFCISTDSFYLFCFVVL--FMSLNVIKI 267
           ++++R  NYL I++     Y   C   +   L C  +L   + LN++KI
Sbjct: 843 IKVVRRRNYLVIVDSEKEEYTCICSKFEKDGLLCSHILKIMLHLNIMKI 891


>05_06_0285 +
           26922967-26923051,26923258-26923362,26924044-26924072,
           26925078-26925224,26926402-26926632
          Length = 198

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -2

Query: 314 LFCFVVLFMSLNVIKILGNSFYFYKFSIQ 228
           L CF +LF  L   ++LG ++Y Y   I+
Sbjct: 12  LLCFFLLFAQLLQARMLGEAYYSYPHRIR 40


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,186,115
Number of Sequences: 37544
Number of extensions: 214206
Number of successful extensions: 372
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 368
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 372
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)