Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0013_H21
         (516 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39851-2|AAF99874.1|  540|Caenorhabditis elegans Hypothetical pr...    32   0.28 
Z68000-4|CAA91972.4| 1342|Caenorhabditis elegans Hypothetical pr...    27   8.0  
Z50739-4|CAA90605.4| 1342|Caenorhabditis elegans Hypothetical pr...    27   8.0  

>U39851-2|AAF99874.1|  540|Caenorhabditis elegans Hypothetical
           protein C23G10.6 protein.
          Length = 540

 Score = 31.9 bits (69), Expect = 0.28
 Identities = 16/50 (32%), Positives = 27/50 (54%)
 Frame = +2

Query: 29  DEPRSRCSLTQVSGALLVWTVSSLATYGIAMERIFNKLSNQNSSAAARHI 178
           D+ R+   LT+ +GA+ VW  + L  YGI  E +   L N+     A+++
Sbjct: 406 DQVRNANMLTRHNGAIFVWK-NDLGNYGIVKEAVHQILYNEKYKRNAKYL 454


>Z68000-4|CAA91972.4| 1342|Caenorhabditis elegans Hypothetical protein
            F13D2.1 protein.
          Length = 1342

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 13/49 (26%), Positives = 22/49 (44%), Gaps = 4/49 (8%)
 Frame = -3

Query: 151  LV*KFVKNSFHCYSI----SSKGRNCPHKQSPAYLGKATPTSGFIWSLI 17
            ++   V N   CY +    S  G+N P+K +P  +    P  G +  L+
Sbjct: 1106 IITNIVSNQTLCYKVALSESRGGKNIPYKSAPVPIRATHPVQGLVGMLL 1154


>Z50739-4|CAA90605.4| 1342|Caenorhabditis elegans Hypothetical protein
            F13D2.1 protein.
          Length = 1342

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 13/49 (26%), Positives = 22/49 (44%), Gaps = 4/49 (8%)
 Frame = -3

Query: 151  LV*KFVKNSFHCYSI----SSKGRNCPHKQSPAYLGKATPTSGFIWSLI 17
            ++   V N   CY +    S  G+N P+K +P  +    P  G +  L+
Sbjct: 1106 IITNIVSNQTLCYKVALSESRGGKNIPYKSAPVPIRATHPVQGLVGMLL 1154


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,229,178
Number of Sequences: 27780
Number of extensions: 217554
Number of successful extensions: 510
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 503
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 510
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)