Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_H20
(597 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC328.10c |rps502|rps5-2|40S ribosomal protein S5|Schizosaccha... 212 4e-56
SPAC8C9.08 |rps5||40S ribosomal protein S5|Schizosaccharomyces p... 212 4e-56
SPAC16E8.10c |||mitochondrial ribosomal protein subunit S7|Schiz... 37 0.003
SPAC17G6.04c |cpp1||protein farnesyltransferase beta subunit Cpp... 28 0.90
SPBC2G5.03 |||ATP binding protein|Schizosaccharomyces pombe|chr ... 27 1.6
SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces pombe... 27 2.7
SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex su... 26 4.8
SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces pom... 25 8.4
SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces... 25 8.4
SPAC140.03 |arb1||argonaute binding protein 1|Schizosaccharomyce... 25 8.4
SPBC1604.04 |||thiamine pyrophosphate transporter|Schizosaccharo... 25 8.4
>SPAC328.10c |rps502|rps5-2|40S ribosomal protein
S5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 203
Score = 212 bits (517), Expect = 4e-56
Identities = 107/152 (70%), Positives = 125/152 (82%)
Frame = +1
Query: 133 IKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSAGRYAHKRFRKAQCPIVERLTNSL 312
IKLF ++ V+V D+SL DYI++ + LPH+AGR+ KRFRKA+C IVERLTNSL
Sbjct: 18 IKLFNKFPFEGVEVKDISLVDYITIGN--GQPLPHTAGRFQTKRFRKARCFIVERLTNSL 75
Query: 313 MMHGRNNGKKLIAVRIVKHAFEIIHLLTGENPLQVLVTAIINSGPREDSTRIGRAGTVRR 492
MM+GRNNGKKL+A RIVKHAFEII LLT +NPLQVLV A+ GPREDSTRIG AGTVRR
Sbjct: 76 MMNGRNNGKKLLATRIVKHAFEIIALLTDQNPLQVLVDAVAACGPREDSTRIGSAGTVRR 135
Query: 493 QAVDVSPLRRVNQAIWLLCTGAREAAFRNIKT 588
QAVDVSPLRRVNQA+ L+ GAREAAFRN+K+
Sbjct: 136 QAVDVSPLRRVNQALALITIGAREAAFRNVKS 167
>SPAC8C9.08 |rps5||40S ribosomal protein S5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 212 bits (517), Expect = 4e-56
Identities = 107/152 (70%), Positives = 125/152 (82%)
Frame = +1
Query: 133 IKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSAGRYAHKRFRKAQCPIVERLTNSL 312
IKLF ++ V+V D+SL DYI++ + LPH+AGR+ KRFRKA+C IVERLTNSL
Sbjct: 18 IKLFNKFPFEGVEVKDISLVDYITIGN--GQPLPHTAGRFQTKRFRKARCFIVERLTNSL 75
Query: 313 MMHGRNNGKKLIAVRIVKHAFEIIHLLTGENPLQVLVTAIINSGPREDSTRIGRAGTVRR 492
MM+GRNNGKKL+A RIVKHAFEII LLT +NPLQVLV A+ GPREDSTRIG AGTVRR
Sbjct: 76 MMNGRNNGKKLLATRIVKHAFEIIALLTDQNPLQVLVDAVAACGPREDSTRIGSAGTVRR 135
Query: 493 QAVDVSPLRRVNQAIWLLCTGAREAAFRNIKT 588
QAVDVSPLRRVNQA+ L+ GAREAAFRN+K+
Sbjct: 136 QAVDVSPLRRVNQALALITIGAREAAFRNVKS 167
>SPAC16E8.10c |||mitochondrial ribosomal protein subunit
S7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 259
Score = 36.7 bits (81), Expect = 0.003
Identities = 23/53 (43%), Positives = 28/53 (52%)
Frame = +1
Query: 289 VERLTNSLMMHGRNNGKKLIAVRIVKHAFEIIHLLTGENPLQVLVTAIINSGP 447
V+ L N +M +GKK A +IV A II TGENP+ VL AI P
Sbjct: 126 VQHLVNLIM----RDGKKAKAEKIVATALSIIQKETGENPIDVLKQAIAEISP 174
>SPAC17G6.04c |cpp1||protein farnesyltransferase beta subunit
Cpp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 382
Score = 28.3 bits (60), Expect = 0.90
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -1
Query: 192 LQRHVRYLNVITTPSPKKFDFGNISRLW 109
LQ+H++YL + P P F + SR W
Sbjct: 31 LQKHLKYLTKMLDPLPSPFTVLDASRAW 58
>SPBC2G5.03 |||ATP binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 335
Score = 27.5 bits (58), Expect = 1.6
Identities = 17/51 (33%), Positives = 28/51 (54%)
Frame = +1
Query: 370 AFEIIHLLTGENPLQVLVTAIINSGPREDSTRIGRAGTVRRQAVDVSPLRR 522
+ +I HL+TG N + T ++N R D R+ R+ + Q+ D SP +R
Sbjct: 159 SLDIHHLVTGHNADDIAETILMNL-LRGDVARLPRSTEITTQS-DSSPTKR 207
>SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 26.6 bits (56), Expect = 2.7
Identities = 16/46 (34%), Positives = 26/46 (56%)
Frame = +1
Query: 118 ADIPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSAGRYA 255
ADI + FGR ++++++ + I+V+EKYAK P R A
Sbjct: 9 ADI-SLAAFGR---KELEIAENEMPGLIAVREKYAKSQPLKGARIA 50
>SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex
subunit Mtr4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1117
Score = 25.8 bits (54), Expect = 4.8
Identities = 14/47 (29%), Positives = 27/47 (57%)
Frame = +1
Query: 91 VDNMPLPQPADIPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYL 231
V+NM + +P I KL + + + ++ L ++ ++EKYA+YL
Sbjct: 854 VENMNIKEPTFI---KLMKKVNILESRLLSNPLHNFSELEEKYAEYL 897
>SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1158
Score = 25.0 bits (52), Expect = 8.4
Identities = 14/47 (29%), Positives = 21/47 (44%)
Frame = +1
Query: 247 RYAHKRFRKAQCPIVERLTNSLMMHGRNNGKKLIAVRIVKHAFEIIH 387
+Y KR A+ +V R H R N KL + + H F ++H
Sbjct: 390 KYPRKRQEIAE--LVIRCLQDRSSHVRRNAIKLFSKLLTTHPFSVMH 434
>SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 658
Score = 25.0 bits (52), Expect = 8.4
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -1
Query: 228 IFCILLFYRNIILQRHVRYLN 166
I C+L+ RNI L+ + YLN
Sbjct: 487 IICLLMQNRNISLKSQISYLN 507
>SPAC140.03 |arb1||argonaute binding protein 1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 399
Score = 25.0 bits (52), Expect = 8.4
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = -1
Query: 441 RINNSSHQNLQRVFTRQQVNNFKGMFNDTYSDK 343
R++ LQR V+N+KG+++ + SD+
Sbjct: 218 RLSTKLPGRLQRALASIHVDNYKGLWDKSQSDR 250
>SPBC1604.04 |||thiamine pyrophosphate
transporter|Schizosaccharomyces pombe|chr 2|||Manual
Length = 314
Score = 25.0 bits (52), Expect = 8.4
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = +2
Query: 62 KKSPTRAAWLWTTCHYHSRLIF 127
K +P R LW +CH++ +I+
Sbjct: 256 KVAPGRYECLWLSCHFYYSIIY 277
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,551,665
Number of Sequences: 5004
Number of extensions: 54246
Number of successful extensions: 155
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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