Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0013_H19
(542 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC576.11 |rpl15||60S ribosomal protein L15|Schizosaccharomyces... 144 1e-35
SPAC1783.08c |rpl1502|rpl15-2|60S ribosomal protein L15b|Schizos... 144 1e-35
SPBC800.10c |||EPS15 repeat family actin cortical patch componen... 29 0.44
SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch... 27 1.8
SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter family|Sch... 26 3.1
SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 26 4.1
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 25 5.5
SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo... 25 7.2
SPBPB2B2.18 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual 25 7.2
SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual 25 9.5
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb... 25 9.5
>SPCC576.11 |rpl15||60S ribosomal protein L15|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 201
Score = 144 bits (348), Expect = 1e-35
Identities = 68/131 (51%), Positives = 85/131 (64%)
Frame = +3
Query: 150 MGAYRYIQELYRKKLSDVMRFLLRIRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQGYV 329
MGAY+Y++EL +KK SDV FL R+R W+YRQ+ +HRA RP+RPDKARRLGY+AKQGYV
Sbjct: 1 MGAYKYLEELAKKKQSDVNLFLSRVRAWEYRQMNVIHRASRPSRPDKARRLGYKAKQGYV 60
Query: 330 IFRIXXXXXXXXXXXXXXATYGKPKSHGVNQLKPTRNLQSIADEXXXXXXXXXXXXNSYW 509
I+RI TYGKP GVN LK R+ + A+E NSYW
Sbjct: 61 IYRIRVRRGGRKRPVPKGQTYGKPVHQGVNHLKYQRSARCTAEERVGRYCSNLRVLNSYW 120
Query: 510 VAQDSSYKYFE 542
V QD++YK+FE
Sbjct: 121 VNQDATYKFFE 131
>SPAC1783.08c |rpl1502|rpl15-2|60S ribosomal protein
L15b|Schizosaccharomyces pombe|chr 1|||Manual
Length = 201
Score = 144 bits (348), Expect = 1e-35
Identities = 68/131 (51%), Positives = 85/131 (64%)
Frame = +3
Query: 150 MGAYRYIQELYRKKLSDVMRFLLRIRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQGYV 329
MGAY+Y++EL +KK SDV FL R+R W+YRQ+ +HRA RP+RPDKARRLGY+AKQGYV
Sbjct: 1 MGAYKYLEELAKKKQSDVNLFLSRVRAWEYRQMNVIHRASRPSRPDKARRLGYKAKQGYV 60
Query: 330 IFRIXXXXXXXXXXXXXXATYGKPKSHGVNQLKPTRNLQSIADEXXXXXXXXXXXXNSYW 509
I+RI TYGKP GVN LK R+ + A+E NSYW
Sbjct: 61 IYRIRVRRGGRKRPVPKGQTYGKPVHQGVNHLKYQRSARCTAEERVGRYCSNLRVLNSYW 120
Query: 510 VAQDSSYKYFE 542
V QD++YK+FE
Sbjct: 121 VNQDATYKFFE 131
>SPBC800.10c |||EPS15 repeat family actin cortical patch component
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1116
Score = 29.1 bits (62), Expect = 0.44
Identities = 25/94 (26%), Positives = 39/94 (41%), Gaps = 1/94 (1%)
Frame = -1
Query: 359 ATTAHADSEDNITLLGTVSKPSRLVWPRGPGSAVHTSQLAILPHSYTQEKSHNIA-QLFP 183
A+T + N+ + G S P W SAV ++ S N + P
Sbjct: 771 ASTVSRNPFHNLKISGA-SSPVSNFWESEFASAVFPRSISKTTSLSVNNSSVNPSLDSEP 829
Query: 182 IQLLYISVRAHLDESVIDLATKSIQN*SEVTSSV 81
+QL + H D SV+D++T + Q S V S +
Sbjct: 830 VQLSNMEEPQHQDSSVVDVSTSASQRGSPVLSDL 863
>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 845
Score = 27.1 bits (57), Expect = 1.8
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -1
Query: 236 LPHSYTQEKSHNIAQLFPIQLLYISVRAH 150
LPHS EKS N+ Q +QL ++++ H
Sbjct: 761 LPHSCEMEKSLNVLQHKVLQLQAVNMKLH 789
>SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 791
Score = 26.2 bits (55), Expect = 3.1
Identities = 9/26 (34%), Positives = 17/26 (65%)
Frame = +1
Query: 433 LATCSLLLMSVLVAGVVVYACLIHTG 510
L T + + V +AG+ +Y C+++TG
Sbjct: 730 LITAAAMDCGVAIAGLFIYFCVVYTG 755
>SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 547
Score = 25.8 bits (54), Expect = 4.1
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = -1
Query: 254 TSQLAILPHSYTQEKSHNIAQLFPIQLL 171
+SQL L H+Y +EKS N L IQ L
Sbjct: 433 SSQLEHLKHNYEEEKSMNENLLVRIQTL 460
>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 3227
Score = 25.4 bits (53), Expect = 5.5
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +1
Query: 58 ISRPICVQTDDVTSDQFCIDFVARSITD 141
I P+ V TDD T+ F ++ S+TD
Sbjct: 1163 IKEPLDVVTDDNTNSNFSLEETNASVTD 1190
>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
Length = 963
Score = 25.0 bits (52), Expect = 7.2
Identities = 9/36 (25%), Positives = 20/36 (55%)
Frame = -1
Query: 215 EKSHNIAQLFPIQLLYISVRAHLDESVIDLATKSIQ 108
++ H I Q PI+++ + + ++ +I+L K Q
Sbjct: 901 DRIHRIGQKRPIKVITLCIENSIESKIIELQEKKAQ 936
>SPBPB2B2.18 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
Length = 175
Score = 25.0 bits (52), Expect = 7.2
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Frame = -3
Query: 183 YTTPVYICTRPS*RVCD--RPSNKINTKLIRSHIIGLNTNRAADARIVQHDESTGI 22
YT V C++ CD P+N + + RSH L T + +DA Q++ T I
Sbjct: 54 YTNKVLCCSQ-----CDWHEPANVYSIEQRRSHDDDLPTIKGSDASTQQYERKTYI 104
>SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 366
Score = 24.6 bits (51), Expect = 9.5
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = +3
Query: 216 LRIRVWQYRQLTRMHRAPRPTRPD 287
L+ +W Y L R++ PR PD
Sbjct: 280 LKETMWDYLNLVRVYTRPRGLEPD 303
>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1778
Score = 24.6 bits (51), Expect = 9.5
Identities = 10/28 (35%), Positives = 14/28 (50%)
Frame = +1
Query: 295 EGLDTVPSKVMLSSESACAVVAVNAQCP 378
E L+ +P KV++ CAV V P
Sbjct: 841 EKLEDIPGKVVVFERKICAVYPVEGSSP 868
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,217,032
Number of Sequences: 5004
Number of extensions: 42184
Number of successful extensions: 115
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 223909422
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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